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Name : VCD_001340 (VCD_001340) Accession : YP_002877081.1 Strain : Genome accession: NC_012668 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 351006 - 353207 bp Length : 2202 bp Strand : - Note : - DNA sequence : ATGGCGCTCGTCTTACTCACTGTGCAGTGCACAGAGAGCGCCTTTTTTCGCCTTGGAGATGTCCAAATGAATATTTTCGC TATCTTGAACCACATGGGTGTGTTCTTTAAAGAAGAGCCTGTTCGCCAACTGCATGCAGCATTAGAAAAAGCCGGTTACG ACGTGGTTTATCCGGTGGATGACAAAGATCTGATCAAGATGATTGAGATGAACCCACGCATTTGCGGCGTGCTGTTCGAC TGGGATAAATACTCGCTAGAGCTGTGTGAGCGCATCAGTAAAGTCAATGAAAAACTGCCTGTGCACGCCTTTGCTAACGA GCAATCGACGTTAGATATTTCGCTAACCGATCTGCGCCTCAACGTGCATTTCTTCGAATACGCTCTGGGCATGGCCGACG ATATCGCCATCAAGATCAATCAAGCGACTCAAGAGTACAAAGACGCGATCATGCCTCCGTTTACTAAGGCGCTGTTCAAA TATGTAGAAGAGGGTAAATACACCTTCTGTACTCCGGGCCATATGGGCGGTACTGCGTTCCAGAAAAGCCCTGTTGGCAG CATTTTCTACGATTTCTACGGTCCAAATACCTTCAAAGCGGACGTATCGATTTCGATGCCAGAACTGGGCTCACTGCTCG ATCACTCCGGTCCACACAAAGAAGCGGAAGAGTACATCGCGCGCACGTTCAATGCCGATGCTTCTTACATCGTGACCAAC GGTACATCGACCTCGAACAAGATCGTCGGTATGTTCTCCGCGCCTGCGGGTAGCACAGTGCTGGTGGATCGTAACTGCCA TAAATCATTGACTCACTTAATGATGATGACGGATGTAACGCCAATTTACTTCCGTCCAACCCGTAACGCTTACGGCATTC TTGGTGGTATTCCACAGAACGAATTCAGCCGTGAAGTGATTGCAGAGAAAGTGGCAAACACCCCGGGGGCGAGCGCACCA AGCTACGCGGTGATCACCAACTCGACTTACGATGGCCTGCTGTACAACACTCAGTTCATTAAAGAGTCGCTGGATTGCAA ACACATCCACTTCGACAGTGCATGGGTGCCTTACACTAACTTCAACCGTATTTATGAAGGCAAGTGCGGCATGAGTGGCG AAGCGATGCCGGGTAAAGTGTTCTACGAAACCCAGTCCACGCACAAACTGCTGGCGGCGTTCTCGCAAGCCTCGATGATT CATGTCAAAGGTGAGTTTGACCGCGAGTCGTTCAACGAAGCCTTTATGATGCACACCTCAACCTCACCGCAGTACGGCAT TGTGGCATCGACGGAAACTGCCGCTGCAATGATGCGTGGCAACACCGGCCGTAAGCTTATGCAGGATTCGATTGATCGTG CGATTCGCTTCCGTAAAGAGATCAAACGTCTGAAAGGCGAGAGCGAAGGCTGGTTCTTCGATGTGTGGCAACCCGAGAAC ATTGAGACCACCGAGTGCTGGAAACTCGATCCAAACCAAGATTGGCACGGCTTCAAGAATCTTGATGACAACCACATGTA CCTTGACCCCATCAAAATCACTCTGCTGACTCCGGGAATGAGCAAAGATGGCGAATTGGAGCAGAGCGGTATTCCGGCAT CACTGGTCTCTAAATACCTTGATGAACACGGTATCGTGGTTGAGAAAACTGGCCCTTACAACCTGCTGTTCCTGTTCTCT ATCGGTATTGATAAGTCAAAAGCGATGCAGTTGCTGCGCGGCTTGACGGAGTTCAAACGCGGTTACGATCTGAACCTGAC CATTCGTACCATGCTGCCTTCACTGTACCGTGAAGACCCAGTTTTCTACGAAGGCATGCGTATTCAAGAGTTGGCGCAAG GCATTCACGACTTAACTCGTAAATACCAATTGCCAGAGCTGATGTACAAAGCGTTCGATGTGCTGCCAGAGATGAAAGTG ACGCCACACGTGGCATGGCAACAAGAGCTGCGCGGTCAAACTGAAGAGATCCTGCTTAACGAGATGGTGGGTCGCGTGAG CGCCAATATGATCCTGCCTTATCCTCCAGGCGTGCCATTGGTACTGCCAGGTGAAATGGTGACAGACAGCTCTCGCCCTG TGTTGGATTTCTTGGAAATGCTGTGCGAAATCGGCGCGCATTACCCAGGTTTTGAGACCGACATTCATGGTTTGTATCGC CAAAAAGATGGCTCTTACACCGTAAAAGTGCTGAAGGACTAA Protein sequence : MALVLLTVQCTESAFFRLGDVQMNIFAILNHMGVFFKEEPVRQLHAALEKAGYDVVYPVDDKDLIKMIEMNPRICGVLFD WDKYSLELCERISKVNEKLPVHAFANEQSTLDISLTDLRLNVHFFEYALGMADDIAIKINQATQEYKDAIMPPFTKALFK YVEEGKYTFCTPGHMGGTAFQKSPVGSIFYDFYGPNTFKADVSISMPELGSLLDHSGPHKEAEEYIARTFNADASYIVTN GTSTSNKIVGMFSAPAGSTVLVDRNCHKSLTHLMMMTDVTPIYFRPTRNAYGILGGIPQNEFSREVIAEKVANTPGASAP SYAVITNSTYDGLLYNTQFIKESLDCKHIHFDSAWVPYTNFNRIYEGKCGMSGEAMPGKVFYETQSTHKLLAAFSQASMI HVKGEFDRESFNEAFMMHTSTSPQYGIVASTETAAAMMRGNTGRKLMQDSIDRAIRFRKEIKRLKGESEGWFFDVWQPEN IETTECWKLDPNQDWHGFKNLDDNHMYLDPIKITLLTPGMSKDGELEQSGIPASLVSKYLDEHGIVVEKTGPYNLLFLFS IGIDKSKAMQLLRGLTEFKRGYDLNLTIRTMLPSLYREDPVFYEGMRIQELAQGIHDLTRKYQLPELMYKAFDVLPEMKV TPHVAWQQELRGQTEEILLNEMVGRVSANMILPYPPGVPLVLPGEMVTDSSRPVLDFLEMLCEIGAHYPGFETDIHGLYR QKDGSYTVKVLKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 76 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VCD_001340 | YP_002877081.1 | lysine decarboxylase | VFG1670 | Protein | 0.0 | 63 |
