Gene Information

Name : VCD_003494 (VCD_003494)
Accession : YP_002879222.1
Strain :
Genome accession: NC_012668
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis protein S
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2767639 - 2768097 bp
Length : 459 bp
Strand : -
Note : -

DNA sequence :
ATGAATATCAAACTATCATTTATTTCAATTGCTTTTCTATCGTTAAGTTTTAATGTTGCTGCTAACGAATTTGAAAAATC
TCAAGAGCACTACAAAAGTGTAACTGATTTAAAAAACAAAATCGAAATACTAGAGTTAGAAAAGAAAATAACAGAGCTGA
GTGGCGAGATTCGCAATGCAAGAATGCCAAAAATAGATAAGTCTGCACCCGTTTTATCTCCTCAGCCTGTAGTAAAATCG
TCAGAAGAATTACAAAAAAGTATCGAACATATAGAAGAAGAGCTCAAAGTGGAATTGGCTTATTTGGTTAACAATGGTCA
ACAAAAAAAATATACATTCAATCTTAATGGCAAACTTATCACATTGGTTAATGGTGATTTTGTAAATGGTTGGAAATTCA
TTGAAGACCAAAATAAAATTCAATTTTCCAAGGGCAATAAGGTAATCGATGTCAATTGA

Protein sequence :
MNIKLSFISIAFLSLSFNVAANEFEKSQEHYKSVTDLKNKIEILELEKKITELSGEIRNARMPKIDKSAPVLSPQPVVKS
SEELQKSIEHIEEELKVELAYLVNNGQQKKYTFNLNGKLITLVNGDFVNGWKFIEDQNKIQFSKGNKVIDVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0834 NP_230482.1 toxin co-regulated pilus biosynthesis protein S Virulence VPI-1 Protein 4e-47 100
tcpS AAK20791.1 toxin-coregulated pilus biosynthesis protein S Virulence VPI Protein 3e-47 100
tcpS YP_001216315.1 toxin co-regulated pilus biosynthesis protein S Virulence VPI-1 Protein 2e-46 99
tcpS AAK20761.1 toxin-coregulated pilus biosynthesis protein S Virulence VPI Protein 2e-46 99
tcpS CAA45461.1 - Virulence VPI Protein 2e-46 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_003494 YP_002879222.1 toxin co-regulated pilus biosynthesis protein S VFG0097 Protein 1e-47 100