Gene Information

Name : VCD_003488 (VCD_003488)
Accession : YP_002879216.1
Strain :
Genome accession: NC_012668
Putative virulence/resistance : Virulence
Product : accessory colonization factor AcfB
Function : -
COG functional category : N : Cell motility
COG ID : COG0840
EC number : -
Position : 2760430 - 2762310 bp
Length : 1881 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGTTTTCTATCAAGTTACTAATGATTTTTACATCAATTATAATTACTATTTCATCTATCCTTACTTACTTTCAGAT
GCATGGAACCAATGAATATCTTGATCGTACGATAAAAGATACTATTTCTGAAACGCTAGACTCTTTGGAAGATAAAATAA
ATCTTTCTATTGAGTCCAAGGTCGATGTGTCAAAATCTGTTATCGACATTTATGAAAATTTACTGGAGGGGGAATCCCCT
CTCAGTAAATTTAAGGATGTTGATGTCAATCATCTTTCAAATGTTTTTCAATTGTTCGGATATGCTGATGAAAGAACAGG
AGAGATCATTACTAATGACCCAAACTTTAAAGTGCCTACAGGATTCGATCCAAGGACTCGATCGTGGTATTTAAATGCAA
AAAAATTGAATACCTTTAGTTTGTCTGAGCCGTATGTCGATCTCATTACAGAGAAGTTAATGGTGACAACAAGTGCACCA
ATATATAATAAAAACGATTTAACAGGAGTTATATTTTTTGATATACCACTAGATGACGTTCAGGAATTAATTAAAAGCTA
CAATCCATTTGATGCCGGCACGATTTTTATCGTTGATAACAGTGGGAAAATAATTTTCGGTAATAAAAATGATATATCGG
GTAAAAATTTATTTGGAGACTTTGATAGCTTCCCTCTATCGGTAAGTGAGTCAAAAACGAAAGATAAAAATGGGGTAAAT
TACGATGTACTCATCAAAATGTCAGACTTTGGCGGTTGGAATCTTGTTTCTATTATCGACCATGATAAAGCACGCTCTGA
TATTATCACGTTGAGAAACAATAGTATATTTACTGCCGTCATTTTAGCAAGTGTTTTCTTTGCTATCTTGTTGTTTACTA
TGCGGTTAATGCTGAAGCCATTGCATCAATTAACCGATGCAATGGTAAATATTTCATCGGGCAGTGCTGATCTTACGGTT
CGTATCCCGAATAGTACGGATCAAGAGTTTTCAAAAATAATAAATTCCTTTAACATTTTTGTTGGTAATCTGCAATCTAT
TGTGTCGGAGGTTAAAATGAACTCAGAAAAAATAAATTGCATAACTACTGAAACACAAGAGCTAGTCGAAGTTTGCAATA
ATAGCGTAGCTGATCAGTATCGTGAACTTGATATGCTAGCTAGCTCAATGAATGAGATGGTGGCAACATCTAATCAGATT
GCACAAATTACATCCGAAGCATCAGAGATCACATCTAAGATTAACGGTCAAGTGAATGAAGGAGTCGGTGCTGTTTCTTC
TGTTACCGAAAGTGTAGGTAATTTAGTTGAGAAGTTGGATAAGACGAAATCTGTTATCCAAGATCTTAATCGCCAAACTC
AAAATATAGATGTTATTTTGAAGGCTATTAATGATATTGCTGACCAAACAAACCTTCTTGCTCTTAATGCTGCAATTGAG
GCTGCACGAGCTGGGGAAAATGGACGAGGTTTTGCTGTGGTTGCTGATGAGGTACGCAGCCTAGCAATAAAGACACAAGA
GTCTACTAAAAATATAGGAAGTATTATCCATATATTACAAGAAAACTCTTTGCTATCCGTTCATGTTATGGATGAAAGTT
TTAATATTGCCTCTGAAACTATGACTATATCAGCTGATTCAAAACAATGTTTAGACAATATTAGTCAATCAGTAATACAA
ATTGTTGATATCACAAATCAAGTAGCTACAGCTGCTTACGAACAAAGTCACGTATCAGAGGAAATAAACAGCAACTCTAT
TTCTATAAAAGATAAAGCAGATACCTTATCAAGTTTGGGTAATAAGATTTCTCAACAGGCTTATTCTCAAAAAGCACTGA
TTGGTCATCAAGATGATTTAATCAGTAAGTTTATCATTTAA

Protein sequence : 
MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKVDVSKSVIDIYENLLEGESP
LSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAP
IYNKNDLTGVIFFDIPLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNGVN
YDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTV
RIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQI
AQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIE
AARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQ
IVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKFII

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0840 NP_230488.1 accessory colonization factor AcfB Virulence VPI-1 Protein 0.0 100
acfB AAK20797.1 accessory colonization factor AcfB Virulence VPI Protein 0.0 100
acfB YP_001216321.1 accessory colonization factor AcfB Virulence VPI-1 Protein 0.0 99
acfB AAA82705.1 AcfB Virulence VPI Protein 0.0 99
acfB AAK20767.1 accessory colonization factor AcfB Virulence VPI Protein 0.0 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_003488 YP_002879216.1 accessory colonization factor AcfB VFG0104 Protein 0.0 100