Gene Information

Name : VCD_003487 (VCD_003487)
Accession : YP_002879215.1
Strain :
Genome accession: NC_012668
Putative virulence/resistance : Virulence
Product : accessory colonization factor AcfC
Function : -
COG functional category : R : General function prediction only
COG ID : COG4588
EC number : -
Position : 2759654 - 2760424 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence : 
ATGTATTTCATGAAAAGTAAGAATCGATTTTTATTAATTTCTTTACTATCATTTTCTACGAGTGTTTTTGCGGATGTTAA
TCTTTATGGACCTGGTGGTCCACATGTGCCATTGATTAAAGTTGCAGAAAGTTTTGAAAAATCACAATCAAAACGCGTTA
ATATTACTTTTGGACCTCAAGCTACTTGGAATGACAAAGCAAAAAAAAATGCTGATATTTTATTCGGTGCATCAGAACAT
TCTGCTCTAGCTATTGCAGAAGGACATAGTGAAAGATTTTCAAAATTTAATATTCATCCTGTATTCATGCGTGAAGCAAT
TATCTTAGTAAAAAAAGGTAATCCGAAAAATATTAAGGGTATGGCTGATCTTTTGAAGCCTGGTATCGGAATCGTCGTAA
ATGATGGAGCAGGTGTAAGTAATACATCGGGCACTGCTGTTTGGGAAGATTCAGTTGGTAGAATGAAAAATGTTGAGAAA
CTCCAGGCATTTAGATCTAATATTCACGTTTTTGCCCCAAATAGTGGATCAGCGCGTAAGGCGTTTGTTGATGGTGAAGA
TATTGATGCATGGATTACATGGGTCGATTGGGCCATAGCTAATCCAACAATCGGCGATATGGTTAGAATGGAGGATGAAT
ATCGTATTTATCGTGACTTCAACGTTGTTCTTGCCAAAAATCCATCTAGTGAAGCGATTGACTTTTTTGATTATCTAACA
AAAAGCAAAGACGCTGAAGCAATCTTTCAGCACTATGGCTGGTTTAAGTGA

Protein sequence : 
MYFMKSKNRFLLISLLSFSTSVFADVNLYGPGGPHVPLIKVAESFEKSQSKRVNITFGPQATWNDKAKKNADILFGASEH
SALAIAEGHSERFSKFNIHPVFMREAIILVKKGNPKNIKGMADLLKPGIGIVVNDGAGVSNTSGTAVWEDSVGRMKNVEK
LQAFRSNIHVFAPNSGSARKAFVDGEDIDAWITWVDWAIANPTIGDMVRMEDEYRIYRDFNVVLAKNPSSEAIDFFDYLT
KSKDAEAIFQHYGWFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 4e-107 100
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 4e-107 100
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 4e-105 100
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 4e-105 100
acfC AAA82706.1 AcfC Virulence VPI Protein 4e-105 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_003487 YP_002879215.1 accessory colonization factor AcfC VFG0105 Protein 2e-107 100
VCD_003487 YP_002879215.1 accessory colonization factor AcfC VFG0839 Protein 7e-58 52