Gene Information

Name : VCD_001226 (VCD_001226)
Accession : YP_002876969.1
Strain :
Genome accession: NC_012668
Putative virulence/resistance : Virulence
Product : single-stranded DNA-binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0629
EC number : -
Position : 216919 - 217470 bp
Length : 552 bp
Strand : -
Note : binds to single stranded DNA and PriA helcase facilitate replication restart

DNA sequence : 
TTGATTACGGAGCAAAACATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGT
GCGTTATATGCCAAGCGGCGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTG
AACAGAAGGAAAAAACCGAATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAA
GGTTCTCAAGTTTACATTGAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGA
AGTGGTTGTACAAGGCTATAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCG
GCATGAATGTTCCTGCGCAGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCT
GCGCCTCAACAGTACTCGCAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Protein sequence : 
MITEQNMASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRK
GSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQS
APQQYSQPQYNEPPMDFDDDIPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssB NP_458627.1 single strand binding protein Not tested SPI-7 Protein 2e-40 62
ssb NP_807839.1 single-stranded DNA-binding protein Not tested SPI-7 Protein 2e-40 62
ssb AAF14810.1 single strand binding protein Not tested SPI-7 Protein 1e-40 62
ssb AAC26638.1 single-strand binding protein Not tested SPI-4 Protein 2e-33 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_001226 YP_002876969.1 single-stranded DNA-binding protein VFG0576 Protein 3e-43 68