Gene Information

Name : VCD_002626 (VCD_002626)
Accession : YP_002878362.1
Strain :
Genome accession: NC_012668
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1769906 - 1771141 bp
Length : 1236 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAAATAATCTAACCGCAAGGCAAATTCAAACCGCAAAACCTAAGGATAAGCTTTATCGTTTATCTGATGGCGGCAA
TCTCTACTTTTGCGTACGTCCAAGCAATTCTCGCTCATGGCAATTCCGTTATAAACGACCAGGACAAGATAAGATCACTT
ATCTTTCGTTTGGAACCTATCCCGATATGTCTTTGGCGGAAGCTCGAGAGAAAGCCCTTGAGGCTCGCAAGCAGTTAGCG
GATGGTATTGACCCTCAACTCGCTAAAGAAGAACAAAAAGCAAAAACCATTACTGAACAAAATGCGACGTTCAAGTTTGT
CGCTGAGCAATGGAAGGCTACGAAGGAAGGACAAATAAAAGAGAAGACACTGGAAGGGAATTGGCGAAAACTTGAACTTT
ATGCCTTTCCCAAATTGGGCTCGATACCCGTTAGTAAACTTACTGCGCCGATGGCCATCGCTGCATTACGGCCAATAGAG
TCTCAAGGATTACTAGAAACTGTAAAACGCACCGCCCAACTTATGAATGAAATCATGAACTATGCGGTAAATAGCGGTGT
CATTCATGCTAACCCATTAGCTGGCATCCGTGATGTGTTTAAAAAACACAAAGTGGTGCACATGAAAGCCCTGCAACCAC
ATGAAATGCATGATCTTATACGCACCGTTGCTACAGCAAATATCCAGCATGTGACACGATTTTTAATTGAATGGCAACTT
CACACCATGGTTCGGCCTAACGAAGCCTCTGGTGCTCGTTGGGAAGAAATCGACATGGTTAATAAGCTTTGGATTATCCC
TAAAGAGCGAATGAAGATGAACCGCGAGCACGTAGTCCCACTGACAGCACAAACATTGGCTATTCTTGAAGCGATTAAGC
CCATCAGTGGTCATAGAGAATTCATTTTCCCATCTAGCCGTAATCCAAAGGTACCCACCGATTCTGAAACCGCTAATAAA
GCACTTGGCAGAATGGGATTTAAGGATAGAACGACCGCGCACGGTCTTCGTGCTTTGGCAAGTACCACTCTTAATGAACA
GGGCTTTGAACCTGATGTCATTGAAGCCGCATTGGCTCATACTGACAAAAACCAAATACGCAAAGCATACAACCGTACCG
ACTATTTAGACTCTCGTCGAAAGCTTATGAGCTGGTGGAGTGAGCATATCGAAAAATCTAGCTATGGAAGTTACAGTGTG
GCTGGTACTGGATATTTGCACTTACTGAAAGCCTAA

Protein sequence : 
MANNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKALEARKQLA
DGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIE
SQGLLETVKRTAQLMNEIMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQL
HTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFPSSRNPKVPTDSETANK
ALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSV
AGTGYLHLLKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 0.0 100
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 0.0 100
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 0.0 99
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 7e-102 54
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 7e-102 54
int AAK20773.1 integrase Not tested VPI Protein 5e-102 54
int AAK20803.1 integrase Not tested VPI Protein 5e-102 54
unnamed AAA82714.1 integrase Not tested VPI Protein 5e-102 54
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-91 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_002626 YP_002878362.1 phage integrase VFG1092 Protein 0.0 100