Gene Information

Name : VCD_002593 (VCD_002593)
Accession : YP_002878329.1
Strain :
Genome accession: NC_012668
Putative virulence/resistance : Virulence
Product : TRAP-type transport system large permease component
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1719095 - 1720378 bp
Length : 1284 bp
Strand : +
Note : predicted N-acetylneuraminate transporter

DNA sequence : 
ATGGTTGGTTCAATTTTTGGTTGGTTAGGATTGTTATTTGCGGGCATGCCAGTAGGTTTTTCACTTATTTTTGTTGCATT
AGCTTTCCTCATTCTCACCAATAGTACAGGGATTAATTTTGCGGCTCAGCAAATGCTGGGTGGGATCGACAACTTCACGT
TGCTAGCCGTTCCATTTTTTGTGTTAACTGGCCATCTAATGAATAGTGCCGGTATTACAGAAAGAATCTTCAACTTCGCG
AAGTCTCTCGTTGGCCATATTACGGGCAGCTTGGGTCATGTAAATATCATGGCAAGCTTGTTGTTCTCTGGAATGTCTGG
CTCAGCATTGGCAGATGCAGGTGGGTTAGGTCAGCTTGAAATCAAATCCATGCGTGATGCGAAGTATCACGATGATTTCG
CGGGCGGGCTGACAGCGGCATCTTGCATCATTGGTCCTCTGGTGCCGCCATCAGTACCACTAGTCATATACGGTGTGGTT
TCCAATACCTCTATTGGCGCATTATTTTTAGCGGGTGCGATACCTGGTTTGCTGTGTTGTATTGCCTTGATGGTGATGAG
TTATTTTATCTGCAAAAAGCGCGGATATATGACATTGCCTAAAGCGAGCAGACGTGAGCAATTTAAATCACTTAAAGAAG
CATTTTTATCGTTGCTGACACCAGTCATTATCATTGGTGGGATCTTCTCTGGTAAATTTACGCCAACTGAAGCGGCTGCT
GTTTCATCTCTCTACGCACTATTTTTAGGTACAGTTGTTTATAACACGCTCACGTTACAGGGGTTCATCGAAATTCTGAA
AGAAACGGTCAATACCACAGCCGTGGTTGCTCTGATGGTTATGGGCGTGACTGTTTTTGGGTGGATTGTGGCTCGCGAAC
AGTTACCACAGATGTTGGCTGATTATTTCTTAACAATCAGTGATAACCCACTCGTACTGCTTCTGTTGATCAACTTGTTG
CTCCTCTTCTTGGGCACGTTTATTGAGTCATTGGCCTTGCTGTTGCTGCTAGTTCCATTCTTGGTGCCAGTGGCTTCAGC
GGTGGGTATCGATCCTGTTCACTTCGGTGTTATGGCGATTCTTAACCTAATGATTGGCATTCTTACCCCACCAATGGGAA
TGGCTTTATATGTGGTTTCTCGAGTCGGAGATATCCCATTCCATACGCTTACGCGTGGTGTTTTACCACTACTGGTGCCG
CTATTCATCGTGTTGGCGCTGGTGGCGGTATTCCCTCAATTTACTCTGCTACTACCGGAATTATTCCTCGGATACGGACA
GTAG

Protein sequence : 
MVGSIFGWLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMNSAGITERIFNFA
KSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVV
SNTSIGALFLAGAIPGLLCCIALMVMSYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAA
VSSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLL
LLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVP
LFIVLALVAVFPQFTLLLPELFLGYGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 7e-158 100
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 7e-158 100
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 5e-158 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_002593 YP_002878329.1 TRAP-type transport system large permease component VFG1110 Protein 3e-158 100