Gene Information

Name : VCD_002591 (VCD_002591)
Accession : YP_002878327.1
Strain :
Genome accession: NC_012668
Putative virulence/resistance : Virulence
Product : TRAP-type transport system periplasmic component
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1638
EC number : -
Position : 1717550 - 1718515 bp
Length : 966 bp
Strand : +
Note : predicted N-acetylneuraminate-binding protein

DNA sequence : 
ATGAAAACCATTAATAAGATTACTATCGCAATACTTACTTTGAGTGCTGCTGCTTCTGTCAATGCTGCGACGACTTTAAA
GATGGGGATGCAAGCTTCTGTGGGGTCTGTAGAGTATAACTCGGCAAAAATGCTTGCCGACACATTAGAAGAAATGAGTC
AAGGAGAGATCAAACTCGCTTTGTACCCAAGCGCCCAGCTTGGTGATGATCGTGCCATGCTTCAGCAATTGACGCTGGGA
GATCTCGATATAACTTATGCTGAGTTTGGTCGTATGGGGCTTTGGATACCGCGAGCAGAAGCGGTCATGCTCCCTTATGT
CGCGAAAGATTTTGACCATTTACGCCGCATGTTTGAATCTGACTTTGGTCAAGGTGTTCGTGATGAAATGCTCCAGAAGT
TCAACTGGCGTGCTTTGGACACTTGGTATAACGGTACCCGTGAAACCACTTCAAACCGTCCCCTCAATTCGATTGAAGAT
TTTAAAGGGTTAAAACTTCGAGTCCCGAATGCTAAGCAAAACCTCAACTATGCAAAGCTGTCTGGTGCCTCGCCAACCCC
GATGTCATTCTCTGAAGTTTATTTAGCGCTGCAGACCAATGCCGTAGATGGGCAAGAAAACCCGCTACCAACAATTAAAA
CAATGAAGTTCTATGAAGTGCAAAAGAACTTAGCCATGACACATCATATTGTTAACGATCAAATGGTGATCATTTCGGAA
TCTACTTGGCAGAAGCTTTCTGATACGGATAAAGACATCATTCAGAAAGCCGTGCAGAAAGTGGGAGATGCTCATACACA
GACCGTTAAAACTCAAGAGGCAGAATTGGTCTCCTTCTTCAAGAGTGAAGGTATCAACGTGACTTACCCAGATCTGGAGC
CATTCCGAGAAGCGATGCAACCACTTTACAAGGAGTTTGACAGTAACATCGGTCAGCCGATTGTGTCGAAATTGGCAGCA
ATGTAA

Protein sequence : 
MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLG
DLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIED
FKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISE
STWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIVSKLAA
M

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 3e-143 100
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 3e-143 100
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 5e-143 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_002591 YP_002878327.1 TRAP-type transport system periplasmic component VFG1112 Protein 1e-143 100