Gene Information

Name : VCD_000540 (VCD_000540)
Accession : YP_002876298.1
Strain :
Genome accession: NC_012667
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 618943 - 619620 bp
Length : 678 bp
Strand : +
Note : predicted ABC-type transport system, ATPase component

DNA sequence : 
ATGCAAACATCCATCATTTCAGCGCAATCACTATCCAAATTAGTCTCCACTAATCAGGAGCATTTAACAATCCTTAAACA
GGTGAATCTCTCGATTCAAGCGGGAGAAAGTGTGGCGATTGTCGGCGCATCAGGCGCGGGAAAATCGACGCTGATGACGC
TACTGGCGGGGTTAGATACGCCAAGTGAAGGGGAAGTGTATCTGTTGGGGAAACCGCTTTCACAACTGGATGATGAAGCC
CGCGCCGCACTGCGCAGTGAATCCGTTGGGTTTGTGTTCCAAAGTTTTCTGCTTATTCCTAGCCTGTCGGCGCTGGAAAA
TGTCACTCTGCCTTGTTTGTTAAAAGGCGAAGCGGAGGATCGCGAACGTGCCCAGAAGCTGCTCAAAGCGGTCGGTTTGG
AGCATCGAATGCACCATTCGCCCGCACAATTGTCAGGTGGTGAGCAGCAACGCGTAGCGATTGCTCGCGCATTTATGATA
AGCCCCCAAGTGCTTTTTGCTGATGAACCAACGGGCAATTTGGATCAAGAAACAGCTGCAAAAGTGATTGATTTACTGTT
TGAACTGAACCGTGAACACGGCACTACACTAGTGCTGGTGACGCATGACCCTAAACTCGCGCAGCGTTGTCAGCGACGAT
TTTTTATGCAAGCGGGTGAGCTGGAGGAGCGCGTATGA

Protein sequence : 
MQTSIISAQSLSKLVSTNQEHLTILKQVNLSIQAGESVAIVGASGAGKSTLMTLLAGLDTPSEGEVYLLGKPLSQLDDEA
RAALRSESVGFVFQSFLLIPSLSALENVTLPCLLKGEAEDRERAQKLLKAVGLEHRMHHSPAQLSGGEQQRVAIARAFMI
SPQVLFADEPTGNLDQETAAKVIDLLFELNREHGTTLVLVTHDPKLAQRCQRRFFMQAGELEERV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_000540 YP_002876298.1 hypothetical protein NC_008702.1.4606598. Protein 2e-39 47
VCD_000540 YP_002876298.1 hypothetical protein NC_012469.1.7686878. Protein 1e-40 45
VCD_000540 YP_002876298.1 hypothetical protein NC_012469.1.7685735. Protein 6e-36 43
VCD_000540 YP_002876298.1 hypothetical protein CP001581.1.gene598.p Protein 4e-37 41
VCD_000540 YP_002876298.1 hypothetical protein CP001581.1.gene798.p Protein 7e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_000540 YP_002876298.1 hypothetical protein VFG2059 Protein 8e-20 42