Gene Information

Name : VCD_000016 (VCD_000016)
Accession : YP_002875782.1
Strain :
Genome accession: NC_012667
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 12544 - 13218 bp
Length : 675 bp
Strand : -
Note : -

DNA sequence : 
ATGCGAATCTTATTGATTGAAGATGATGAAAGAATTGCCCGTTTTATTGAGCGAGGCTTAAAAGCGGAAGGGCACCAAAT
CCACCGTTTGAAAGATGGTCAATACGGATTAGAAACCGTGAAAAGCAGCGAGCCGGACTTGCTGATCTTAGATCGCATGT
TGCCCCATGTGGATGGGTTAACTCTATGCCAGCAAATCCGTGCGACGGGTAATCAGGTTTTAATCCTGATGTTATCCGCT
TTGGGCGAGGTGGAGGAACGCATCCAAGGATTGCGCACTGGTGCGGATGATTACCTCGCCAAGCCTTTCCATTTTGAAGA
GCTGTTGGCACGCATCGAGGCACTGCAGCGGCGTAATATTCAAACCCACACCAGCAATAAGCTGCGTTTTGCTGATTTAG
AGCTCTGCCTATCCACTATGCGCGTGTATCGTGCCGAGCAACCGATAGAGCTGACGGCAAAAGAGATTTCAATACTTGAG
CTCTTTTTGCGTAAACCGGGGCATATTTTTAGCCGGGAGCGAATTTTGGCGAATGTGTGGGGCATTCACCAAGATCCGCT
GACCAATGTAGTCGATGTCTATATGCGTCGTTTACGCAAGAAAATCGATATGCCTTTTGCCCAGCCGCTGATCCAAACCA
AGCGGGGTATGGGGTATTACTTAGGTGACGCTTAA

Protein sequence : 
MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLTLCQQIRATGNQVLILMLSA
LGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNIQTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILE
LFLRKPGHIFSRERILANVWGIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-32 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_000016 YP_002875782.1 transcriptional regulator BAC0125 Protein 1e-42 45
VCD_000016 YP_002875782.1 transcriptional regulator BAC0638 Protein 2e-38 45
VCD_000016 YP_002875782.1 transcriptional regulator BAC0197 Protein 3e-38 43
VCD_000016 YP_002875782.1 transcriptional regulator BAC0347 Protein 2e-38 42
VCD_000016 YP_002875782.1 transcriptional regulator HE999704.1.gene1528. Protein 7e-29 42
VCD_000016 YP_002875782.1 transcriptional regulator BAC0111 Protein 1e-40 41
VCD_000016 YP_002875782.1 transcriptional regulator BAC0308 Protein 3e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_000016 YP_002875782.1 transcriptional regulator VFG0596 Protein 4e-33 43
VCD_000016 YP_002875782.1 transcriptional regulator VFG1390 Protein 3e-39 41