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Name : rspR (PFLU0728) Accession : YP_002870393.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Virulence Product : putative type III secretion system, regulatory protein Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 829441 - 830358 bp Length : 918 bp Strand : - Note : - DNA sequence : ATGTCGGCCTCTGACACTATGGACAATGAAGCGGATATTTCACTGCTTGAAGGCCCCGACATTGAAGAAATACTGAGCGG CACTGCCCAGCTCAATATAGATATTTTGCTGCTGGGAGAAACCGGAACCGGTAAGGACACCTTGGCGCAGCGAATCCATC GTTTATCCGGACGACGGGGGAGTTTCATCGCTGTGAACTGTGCCGCCATTCCCGAAACCCTCGCGGAAAGCCAACTGTTC GGCGTCAATAGCGGAGCCTATACAGGCGCTGTACAGTCCAGGGCAGGCTTTATCGAAGCCGCACATCTAGGCACCTTGTA CCTGGATGAAATCGACAGCATGCCGCTTTCCTTGCAAGCCAAGCTACTGCGCACGCTTGAATCGCGCGGTGTCGAGCGGC TCGGCTCGACCCGGTTTATTCCTGTAGACATGCGCGTTATCGCATCGGCTCAACAGTCGCTATACGAAATGGTTGAACGC GGGACTTTCCGGCGAGACCTGTATTTTCGTTTGAGTGTCGTCAACATCCAGCTCCCGTCTTTGCGAGAGTGCAGAGATCG TATAATCCCGCTTTTTTTGACCATGATCCGCCAAGAAGCGGAATCGTTTAAATGCCCTTATCCCCAGCCTCCGAGCTCCT TGTTACAACAGTTGTTATGCCATCCCTGGCCTGGCAACGTTCGCGAGCTGAGTTCCACGGCTAAACGCTTTGTTTTAGGC CTTCCTCCACTCTCAGTGAGGGGTAAGAATCCTAAGATATCTGAAGCAAGCCTCAAAGAACGCTTACAACGTATTGAGAA GTCACTGATTGAGGAATCACTGCATCGGCACAACGGCAATGTGGACCTGGCGGCGGCTGACTTGAGAGTTGCCAAACGTA CATTCTATTACCGGATGAAACAACTTGGGATTGACTAA Protein sequence : MSASDTMDNEADISLLEGPDIEEILSGTAQLNIDILLLGETGTGKDTLAQRIHRLSGRRGSFIAVNCAAIPETLAESQLF GVNSGAYTGAVQSRAGFIEAAHLGTLYLDEIDSMPLSLQAKLLRTLESRGVERLGSTRFIPVDMRVIASAQQSLYEMVER GTFRRDLYFRLSVVNIQLPSLRECRDRIIPLFLTMIRQEAESFKCPYPQPPSSLLQQLLCHPWPGNVRELSSTAKRFVLG LPPLSVRGKNPKISEASLKERLQRIEKSLIEESLHRHNGNVDLAAADLRVAKRTFYYRMKQLGID |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 3e-72 | 58 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 4e-72 | 58 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 7e-72 | 57 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 7e-72 | 57 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 2e-69 | 57 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 4e-68 | 57 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 2e-73 | 57 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 2e-73 | 57 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-65 | 56 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 9e-72 | 56 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 3e-72 | 56 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 1e-72 | 56 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 1e-72 | 56 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-68 | 55 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 1e-68 | 55 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 1e-70 | 55 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 1e-72 | 54 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 2e-65 | 54 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 2e-65 | 54 |
