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Name : rscU (PFLU0718) Accession : YP_002870383.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Virulence Product : putative type III secretion protein Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 822111 - 823208 bp Length : 1098 bp Strand : + Note : - DNA sequence : ATGAGTGACTCGGGCGAAAAAAAGCACCCCGCGTCAGCCAAGAAACTGCGTGACCAGCGCAAGAAAGGCCAGGTCGCCCA AAGCCAGGACGTTGCAAAGCTGCTGGCATTGACGGCCATCAGCGAGATCGCCTTGTTCACCGCCGAGACCAGCCTGCAAC GTTTCCAGCAACTGATGCTACTGCCGTTGTCACGCCTGACCCAGCCCTTTACGCGAGCGCTGGAAGAAGTGCTGTTTGAG GGGATGACAGTGTTTTTTTCGTTCGCCCTGTTGATGGTCGGGGTGGCGATTACCACGAAGCTGATCAGCAGTTGGATGCA GTTCGGGTTGCTGTTCGCTCCCGAGACGCTGAAGCTGGATTTCAATCGCCTCAACCCTATCAGCCAAGTCAAGCAGATGT TCTCTGCCCAGCAGTTGATGAACCTGCTGATGAGCATTGCGAAGGCCTGCCTGATTGCTTCGATTCTGTATGTAGTGATC TGGCCCTCATTGGGCACGCTGATCAACCTGGCCACCAGCGATCTGCAAAGTTACATCCTGGCGTTGATTGCGCTGTTTCG TCACTTGCTGCATGTCTGCCTCGGTATGCTGCTGGTGCTGGCGCTTATCGACCTGATCATGGTGAGGCACTTTTTCGCCA AGCGCATGCGCATGACCCAGGTGGAGGTGGTCAAGGAGTACAAAGACATGGAGGGTGACCCCCACGTCAAAGGGCAGCGG CGTTCGCTGGCGTATCAATTGGCCCAGGAAGAACCCAAGGTCAAGCTGCCCAAGCTGGAGGAGTCCGACATGCTGGTGGT CAACCCGACGCACTTTGCTGTCGCCCTGTATTACCGCCCCGGTAAAACGCCGCTGCCGATGCTGGTGAGCAAAGGCACCG ACGATGAAGCGCGCACATTGATCCGCCGCGCCAAGGCGGCCGATGTGCCGGTGATCCAATGCGTATGGCTGGCGCGCACG CTCTACACGAAAAAGCTGGGCGCAAGCATCCCGCGCGAGACCTTGCGGGCCGTGGCGCTGATTTACCGCACCTTGCGCGA GCTTGATGATGAGGCTAAGCGCGAAACCCTGGAATTGCCGGAGCTTGAACGGCACTGA Protein sequence : MSDSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLLPLSRLTQPFTRALEEVLFE GMTVFFSFALLMVGVAITTKLISSWMQFGLLFAPETLKLDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVI WPSLGTLINLATSDLQSYILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDMEGDPHVKGQR RSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEARTLIRRAKAADVPVIQCVWLART LYTKKLGASIPRETLRAVALIYRTLRELDDEAKRETLELPELERH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 7e-77 | 54 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 7e-77 | 54 |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 2e-76 | 53 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-64 | 53 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 6e-78 | 52 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 6e-78 | 52 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 2e-66 | 52 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 5e-78 | 50 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 6e-77 | 50 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 6e-77 | 50 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 7e-78 | 50 |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 3e-73 | 49 |
