Gene Information

Name : rscR (PFLU0715)
Accession : YP_002870380.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 820391 - 821044 bp
Length : 654 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGATACTGCAAGGGTTGGACCCCTTAGTCCTGGCGGTATTTTTGGCGGCATTGTCGTTGATGCCCATGCTATTGGTCGT
CTGTACGGCGTTCTTGAAGATCGTGATTGTGCTGATGATCACCCGCAACGCCATCGGCGTGCAGCAGGTGCCGCCGAGCA
TGGCTATCAATGGCATTGCGCTTGCGACCACGCTATTTATCATGGCGCCGGTAGGGTATGAAATTGCCGAGAGCGTCAAA
GCTTTGCCTCTTGACCTGAGTAACGTGCAAACGCTGCTGCAGACGGCAAATGAAGCCATCAAACCGTTGCGTGCCTTCAT
GCTGCGCAACATCGACCCGGATGTGCTGACGCACCTGCTGGAAAACACTGCACGCCTGTGGCCCGCGCAAATGGCCCAGG
AGGTGCAACGCGAAGACCTTATCCTGCTGATCCCGGCGTTCGTGCTGTCGCAACTGCAGGCGGGGTTCGAGATAGGCTTC
CTGATCTACATCCCCTTCATCGTCATCGATTTGATTGTCTCCAACCTGCTGCTGGCGCTGGGCATGCAAATGGTCTCGCC
GATGACCATTTCCCTGCCCCTCAAACTGCTGTTGTTCGTGATGGTGTCCGGCTGGTCGCGTTTGCTCGACAGCCTGTTCC
TTTCCTATCTCTGA

Protein sequence : 
MILQGLDPLVLAVFLAALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAESVK
ALPLDLSNVQTLLQTANEAIKPLRAFMLRNIDPDVLTHLLENTARLWPAQMAQEVQREDLILLIPAFVLSQLQAGFEIGF
LIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-63 72
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 7e-63 72
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-60 72
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-60 72
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-61 71
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-61 71
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-65 69
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-64 68
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-64 68
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-64 68
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-63 64
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-39 49
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-44 48
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-36 46
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-36 46
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-36 46
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-36 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 6e-36 45
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-36 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-36 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-36 44
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-38 44
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-38 44
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-39 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-39 43
escR AAC31528.1 L0049 Virulence LEE Protein 3e-39 43
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-39 43
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-39 43
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-39 43
escR AAC38369.1 EscR Virulence LEE Protein 3e-38 43
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-38 43
escR AAK26700.1 EscR Virulence LEE Protein 3e-39 43
escR AAL57527.1 EscR Virulence LEE Protein 3e-39 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-38 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-39 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-39 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 8e-34 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-33 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rscR YP_002870380.1 type III secretion system protein VFG0044 Protein 1e-46 49
rscR YP_002870380.1 type III secretion system protein VFG0394 Protein 3e-45 48
rscR YP_002870380.1 type III secretion system protein VFG0188 Protein 1e-44 47
rscR YP_002870380.1 type III secretion system protein VFG0827 Protein 1e-39 43
rscR YP_002870380.1 type III secretion system protein VFG0715 Protein 1e-38 43
rscR YP_002870380.1 type III secretion system protein VFG0519 Protein 4e-34 42
rscR YP_002870380.1 type III secretion system protein VFG1773 Protein 2e-35 42
rscR YP_002870380.1 type III secretion system protein VFG2338 Protein 2e-28 42
rscR YP_002870380.1 type III secretion system protein VFG2494 Protein 8e-31 42
rscR YP_002870380.1 type III secretion system protein VFG2016 Protein 2e-29 42
rscR YP_002870380.1 type III secretion system protein VFG1259 Protein 2e-27 41