Gene Information

Name : rspL (PFLU0709)
Accession : YP_002870376.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Virulence
Product : sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 816984 - 817535 bp
Length : 552 bp
Strand : -
Note : -

DNA sequence : 
ATGAATATCCCTATTGAAGCCTTAGCGCACCTCGTTGGCAGCTCGCCTCAATTCATGCATCACCTGACAGACGACCAACA
AAAAAAACTTCGGCGTTTCATTCACAAACGCGTACTCAACCCCGAAGATGCAGACGATCTTCTGCAATTGACCTACCTGG
AAGCCTGGCGCAACCGCGAGCGCTTCAGCGGGAATGCCACGCTCAGCACGTGGATGTGCGGCATCGCGCAAAACCTCATA
CGCAACCACTTCAGGCGCCTGTACGCCAAGCCGGTGCATTGCGAATTTGACGAGTCGCTCTGGCATGGCCAAGAGGATAA
CCACAACCTGGATTGGGAGTTTGAAATCAACCGGCGCCTGGAAAAAACCCTGAGTGCCATCGACCACCTGCCAATCGAAA
TGCGCAAGACGCTCTACGCCTCACTGGAAACCGACGGCAGCTACCAGGACACCGCTGACGCACTGGACATTCCTATCGGC
ACCGTTCGCTCGCGCCTATCAAGGGCGCGCGAACAGCTCAAACGCGCCACTCAAAACCCGAAGTCTCCTTAA

Protein sequence : 
MNIPIEALAHLVGSSPQFMHHLTDDQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLI
RNHFRRLYAKPVHCEFDESLWHGQEDNHNLDWEFEINRRLEKTLSAIDHLPIEMRKTLYASLETDGSYQDTADALDIPIG
TVRSRLSRAREQLKRATQNPKSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 8e-33 49
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 8e-33 49
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 9e-34 49
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 4e-33 48
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 7e-33 48
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 7e-33 48
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 1e-31 47
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 1e-24 46
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 9e-33 45
hrpL AAR25629.1 RNA polymerase sigma factor HrpL Not tested Not named Protein 5e-28 45