Gene Information

Name : ribD (PFLU5473)
Accession : YP_002874968.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein RibD
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : 1.1.1.193
Position : 6002855 - 6003964 bp
Length : 1110 bp
Strand : -
Note : [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase]

DNA sequence : 
GTGCTCGACGCCCATTACATGGCCCGCGCCCTCGAACTGGCGCGCAAGGGTCTGTACACCACCCACCCCAACCCTCGGGT
GGGCTGCGTGATTGTGCGCGATGGGCAGGTCGTCGGCGAAGGCTGGCACGTGCGCACCGGCGAGCCCCATGCCGAAGTTC
ATGCCCTGCGCGCTGCCGGTGACAAGGCGCGCGGCGCCACCGCCTATGTGACCCTCGAACCTTGCAGCCACTATGGGCAC
ACCCCGCCGTGCGCCGATGCGCTGGTGAGTGCCGGGTTGGCGCGGGTGGTCGCGGCGATGCAGGACCCTAACCCGGAAGT
CGCCGGGCGCGGCATGCAGCGCCTGGCCCAGGCCGGGATCGACGTGCGCAGCGGTGTGTTGGAAAGTGAAGCGCGGGCCC
TCAACAGAGGGTTCCTCAAGCGCATGGAGCAGGGCCTGCCGTTTGTGCGGGTCAAGCTGGCGATGAGCCTGGACGGCCGC
ACCGCGATGGCCAGCGGCGAAAGCCAATGGATCACCGGCCCCGCCGCCCGCGCTGCCGTACAGCGCCTGCGCGCCGAGGC
CAGCGTGGTGCTGACCGGCGCCGATACGGTGCTGGCCGACGGTGCACGCCTGACCGTGCGCGCCGCCGAACTCGGCCTGG
ATGACGCCACCACCGCCCTGGCCATGTCGCGCCCGCCATTGCGCGTGCTGATCGACGGCCGCCTGCGAGTGCCGCTCAAC
GCGCCGTTCTTCAAGGCTGGCCCGGCGTTGGTCATCACCTGCGTGACCGCCGAAAATCAGTTCCCCCGTGGCCCTGAGTG
CCTGGTGGTGCCGGGTGTCGAAGGCCAGGTCGACTTGCGCTCGGCACTGGTCGCGCTGGCTGCGCGTGGCGTCAACGACG
TGCTGGTGGAAGCTGGTCCAAGCCTGGCGGGTGCGTTTGCCCAACAAGGCCTGGTAGACGAATACGTGATATTCGTCGCA
GGCAAGTTCCTCGGCTCCGCCGCCCGGCCTTTGCTGGACTGGCCGCTTGATAAACTGGCCGACGCCCCCCAACTCAAGAT
CACTGAAATGCGCGCTGTAGGCGACGACTGGCGGGTCACTGCCATCCCTGTGCCAGCAGCGAGCGTATAA

Protein sequence : 
MLDAHYMARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALRAAGDKARGATAYVTLEPCSHYGH
TPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGIDVRSGVLESEARALNRGFLKRMEQGLPFVRVKLAMSLDGR
TAMASGESQWITGPAARAAVQRLRAEASVVLTGADTVLADGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLN
APFFKAGPALVITCVTAENQFPRGPECLVVPGVEGQVDLRSALVALAARGVNDVLVEAGPSLAGAFAQQGLVDEYVIFVA
GKFLGSAARPLLDWPLDKLADAPQLKITEMRAVGDDWRVTAIPVPAASV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 1e-67 47
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 1e-67 47