Gene Information

Name : dnaB (PFLU0537)
Accession : YP_002870209.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 607812 - 609209 bp
Length : 1398 bp
Strand : +
Note : unwinds double stranded DNA

DNA sequence :
ATGAACGATATTTCAGCTCCTGAGCAATACGATCTGCAAACCGCTGCCCTGAAGGTGCCGCCGCATTCCATCGAGGCCGA
ACAGGCCGTGCTCGGTGGTTTGATGCTGGACAACAACGCCTGGGAACGCGTGCTGGATCAAGTCTCGGACGGTGATTTCT
ATCGTCATGACCACCGCCTGATCTTCCGGGCCATCGCTAAGCTGGCCGACCAGAACTCGCCGATCGACGTGGTGACGCTG
GCCGAGCAGTTGGACAAGGAAGGCCAGACCTCCCAAGTTGGTGGCCTGGGCTATCTGGGCGAACTGGCGAAAAACACGCC
CTCTGTCGCCAACATCAAGGCCTATGCCCAGATTGTCCGTGAGCGGGCCACCCTGCGGCAGTTGATCGGCATCAGCACCG
AGATCGCCGACAGCGCCTTCAACCCCGAAGGCCGCACCGCCGCCGAGATCCTCGACGAAGCCGAGCGCCAGATCTTCCAG
ATCGCCGAAGCGCGCCCGAAAACCGGCGGCCCGGTCAGCGTCAACGACCTGCTGACCAAGGCCATCGACCGCATCGATAC
GCTGTTCAACACCGATGCCGCGATTACCGGTATTTCCACCGGTTATGCCGACCTGGACGAGAAAACCAGTGGCCTGCAGC
CTTCCGACTTGATCATCGTCGCCGGCCGTCCGTCCATGGGTAAGACCACCTTTGCGATGAACCTGGTGGAAAACGCCGTA
TTGCGCAGCGACAAGACCGTCCTGGTGTACTCCCTCGAGATGCCAGGTGAATCGTTGATCATGCGGATGCTCTCGTCCCT
GGGCCGTATCGACCAGACCAAGGTGCGTTCCGGCCAGTTGGAAGACGACGATTGGCCGCGCCTGACGTCGGCGGTCAACC
TGCTCAACGATCGCAAGTTGTTTATCGATGACACCGCCGGTATCAGCCCCTCGGAAATGCGCGCGCGCACCCGCCGCCTG
GTGCGTGAGCATGGCGACATCGCGCTGATCATGATCGACTACCTGCAGCTGATGCAGATCCCGGGCTCCAGCGGTGACAG
CCGGACCAACGAAATTTCCGAAATTTCCCGGTCCCTCAAGGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGTTGT
CGCAGCTCAACCGTTCCCTGGAACAACGTCCCAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAG
CAGGACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTACCACCCCGAGACCGAGCACAAGGGCATCGCCGAGAT
CATCATCGGCAAGCAGCGGAACGGCCCCATCGGGTTTATCCGGCTGGCCTTCATTGGTAAGTACACCCGCTTCGAAAACC
TTGCGCCGGGCAGCTACAACTTCGACGACGACGAGTAA

Protein sequence :
MNDISAPEQYDLQTAALKVPPHSIEAEQAVLGGLMLDNNAWERVLDQVSDGDFYRHDHRLIFRAIAKLADQNSPIDVVTL
AEQLDKEGQTSQVGGLGYLGELAKNTPSVANIKAYAQIVRERATLRQLIGISTEIADSAFNPEGRTAAEILDEAERQIFQ
IAEARPKTGGPVSVNDLLTKAIDRIDTLFNTDAAITGISTGYADLDEKTSGLQPSDLIIVAGRPSMGKTTFAMNLVENAV
LRSDKTVLVYSLEMPGESLIMRMLSSLGRIDQTKVRSGQLEDDDWPRLTSAVNLLNDRKLFIDDTAGISPSEMRARTRRL
VREHGDIALIMIDYLQLMQIPGSSGDSRTNEISEISRSLKALAKEFNCPVVALSQLNRSLEQRPNKRPVNSDLRESGAIE
QDADVIMFVYRDEVYHPETEHKGIAEIIIGKQRNGPIGFIRLAFIGKYTRFENLAPGSYNFDDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 4e-121 58
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 4e-107 55
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 6e-105 52
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 2e-105 52
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 9e-105 51
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 4e-99 49
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 5e-97 47
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 5e-97 47
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 6e-79 42