Gene Information

Name : fliP (PFLU4425)
Accession : YP_002873959.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4890552 - 4891295 bp
Length : 744 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGCGCGTTTTATTGACGCTCATGCTGTTGCTGGCGACGCCATTGGCGTTCGGCGCCGACCCGTTGTCGATCCCGGCCAT
TACGCTGGGGACCAACGCGGCGGGGGCGCAGGAGTATTCGGTCAGCCTGCAGATCCTGCTGATCATGACCGCGCTGAGCT
TTATCCCGGCGTTTGTCATGCTGATGACCAGCTTCACGCGGATCATCATCGTGTTCTCGATCCTGCGCCAGGCCCTGGGC
CTGCAGCAGACGCCGTCGAACCAGATTCTCACCGGCATGGCCTTGTTCTTGACGCTGTTCATCATGGCGCCGGTGTTCGA
CAAGGTGAACCAGCAAGCCCTGCAACCCTACCTGGCGGAAAAAATGACCGCCCAGGACGCCATCGACAAGGCCCAGGGGC
CGATCAAGGATTTCATGCTGTCGCAGACCCGCTCCAGCGACCTTGAGCTGTTCATGCGCCTGTCCAAGCGGACCGACATC
GCCACCCCGGACCAGGCGCCGTTGACCATCCTGGTGCCGGCGTTCGTCACCTCCGAATTGAAGACGGCGTTCCAAATCGG
CTTCATGATCTTTATCCCGTTCCTGATCATCGACCTGGTGGTGGCGAGCGTGCTGATGGCCATGGGTATGATGATGCTGT
CGCCGCTGATCATCTCGTTGCCGTTCAAGATCATGCTGTTTGTGCTGGTGGACGGCTGGGCGCTGATTATCGGCACCCTG
GCCAGTAGTTTCGGCGGGGTATAG

Protein sequence : 
MRVLLTLMLLLATPLAFGADPLSIPAITLGTNAAGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALG
LQQTPSNQILTGMALFLTLFIMAPVFDKVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLSKRTDI
ATPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTL
ASSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-31 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-33 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-34 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 6e-30 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 6e-30 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 6e-30 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 9e-33 42
escR AAC38369.1 EscR Virulence LEE Protein 1e-32 41
escR AAK26700.1 EscR Virulence LEE Protein 2e-33 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 7e-33 41
escR AAL57527.1 EscR Virulence LEE Protein 2e-33 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-33 41
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-33 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-33 41
escR AAC31528.1 L0049 Virulence LEE Protein 2e-33 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-33 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-33 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-33 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-33 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-31 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-91 84
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG2016 Protein 5e-69 62
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-61 59
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG2494 Protein 8e-64 58
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG0519 Protein 5e-34 42
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-35 42
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG0188 Protein 2e-35 42
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG0394 Protein 6e-34 42
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG0715 Protein 8e-33 41
fliP YP_002873959.1 flagellar biosynthesis protein FliP VFG0827 Protein 1e-33 41