Gene Information

Name : PFLU3126 (PFLU3126)
Accession : YP_002872701.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Virulence
Product : response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3415681 - 3416343 bp
Length : 663 bp
Strand : +
Note : -

DNA sequence : 
GTGCGCCTATTACTGATCGAGGATGACGACGCATTGGGGGGAGGCATTCACCAGGCACTGGCGCGTGAGGGGTATACCGT
CGACTGGCTGCAAGACGGCAACAGTGCCTTGCATGCCCTGCTCAGCGAAACTTTTGACGCCGTGGTGCTTGACCTTGGCC
TGCCACGCATGGACGGACTGGAAGTGCTGCGTCGCCTGCGCGACAGTGGCGCGACCGTGCCGGTGCTGATCCTCACGGCG
CGCGACGCCACCGAAGACCGCATCGCCGGGCTAGATGCCGGCGCCGATGACTACTTGGTCAAACCGTTCGACCTGGCTGA
ACTCAAGGCGCGTCTGCGCGCCTTGTTGCGCCGCAGCGCCGGGCGTGCCCGGGTGGTAATCGAGCACGCGGGTATCTGCC
TGGACCCGAGCACGCAGCAGGTCAGTTATCACGGTGTCCCCGTGCTTCTCACCCCCAAGGAATATCAACTGCTGCACGAG
CTGCTATCGCCGCCCGGCCGCGTCATGACCCGTGACCAGTTGATGCAATTGCTCTACGGCTGGAACGAAGAAGCCGAAAG
CAACACCCTGGAGGTGCACATCCATCACCTGCGCAAGAAGTTCTCCAGCGAACTGATTCGCACCGTCCGAGGTGTGGGCT
ACCTGGTCGAGGAGCGCCGATGA

Protein sequence : 
MRLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGLPRMDGLEVLRRLRDSGATVPVLILTA
RDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSAGRARVVIEHAGICLDPSTQQVSYHGVPVLLTPKEYQLLHE
LLSPPGRVMTRDQLMQLLYGWNEEAESNTLEVHIHHLRKKFSSELIRTVRGVGYLVEERR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-33 49
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-27 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-26 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFLU3126 YP_002872701.1 response regulator protein BAC0487 Protein 3e-33 49
PFLU3126 YP_002872701.1 response regulator protein AE015929.1.gene1106. Protein 2e-24 43
PFLU3126 YP_002872701.1 response regulator protein NC_002516.2.879194.p Protein 1e-26 43
PFLU3126 YP_002872701.1 response regulator protein NC_007622.3794948.p0 Protein 2e-28 42
PFLU3126 YP_002872701.1 response regulator protein NC_003923.1003417.p0 Protein 2e-28 42
PFLU3126 YP_002872701.1 response regulator protein NC_013450.8614146.p0 Protein 2e-28 42
PFLU3126 YP_002872701.1 response regulator protein NC_002951.3238224.p0 Protein 2e-28 42
PFLU3126 YP_002872701.1 response regulator protein NC_007793.3914065.p0 Protein 2e-28 42
PFLU3126 YP_002872701.1 response regulator protein NC_002758.1121390.p0 Protein 2e-28 42
PFLU3126 YP_002872701.1 response regulator protein NC_010079.5776364.p0 Protein 2e-28 42
PFLU3126 YP_002872701.1 response regulator protein NC_002952.2859858.p0 Protein 2e-28 42
PFLU3126 YP_002872701.1 response regulator protein CP000647.1.gene1136. Protein 8e-23 41
PFLU3126 YP_002872701.1 response regulator protein BAC0308 Protein 2e-27 41
PFLU3126 YP_002872701.1 response regulator protein BAC0197 Protein 2e-29 41
PFLU3126 YP_002872701.1 response regulator protein BAC0530 Protein 9e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFLU3126 YP_002872701.1 response regulator protein VFG0473 Protein 2e-33 48
PFLU3126 YP_002872701.1 response regulator protein VFG0596 Protein 3e-27 45