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Name : PFLU2424 (PFLU2424) Accession : YP_002872026.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Virulence Product : putative type II secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2633906 - 2635324 bp Length : 1419 bp Strand : + Note : - DNA sequence : ATGAGCCTGCTCCCCTACGCCTGGGCCAAATCCCAACGCATCCTCCTGCGCCCCGGCGAGAACGGCATGCTGCTGACCGT CTGCCCCTCAACCCCCGGCTGGTCGATCAGCGAGGTGCAGCGCCAGTTCGGTCAGTCGCAGGTTGAGCAGATACGCGATG ACGAACTCGACGGCCTCCTGGCCAGCGCCTACGCCGACACTGGCAGCGCCGCCGCCGTGGTGGGCGCGGCGGAAAACGAG GTGGACCTCGACCGCCTCATGCAAGACATGCCCGAAATCACCGACCTGCTCGACACCCAGGACGGCGCCCCGGTGATCCG CATGATCAACGCGTTGCTCACCCAGGCCGCCCGCGACGAGGCCAGCGACATCCACATCGAACCCTACGAAACCCACTCCG TGGTGCGCTACCGCGTCGACGGCACCCTGCGGGACGTGGTCTCACCCCGCAAGGCCTTGCATGGCGCGCTGGTGTCGCGA ATCAAGATCATGGCCCAGCTCGATATCGCCGAAAAACGCCTGCCCCAGGATGGGCGTATTGCACTGCGTGTGGCCGGGCG GCCCATCGACATTCGGGTGTCGACCGTGCCCACCGGGCATGGCGAACGAGTCGTCATGCGGCTGCTGGACAAACAAGCCG GGCGCTTGCAGCTGGAAACCCTGGGCATGGAGGCGCAGTTGCTGGCGCGCCTGGATACGCTGATCCGCCAGCCCCACGGC ATCGTGCTGGTCACCGGCCCTACCGGCAGCGGCAAGACCACCAGTCTGTACGCCGCCTTGGCACGGCTGGACGCGAGCAC CAGCAATATCCTCACCGTGGAAGACCCGGTGGAATACGACCTGCCGGGCATCAGCCAGATCCAGGTCAACGCCAAGATCG ACATGACCTTCGGCCTGGCCCTGCGCGCGATCCTGCGCCAGGACCCCGACATCATCATGATCGGTGAGATCCGTGACCTG GAGACCGCACAAATCGCCGTGCAGGCTTCGCTCACCGGTCACCTGGTGCTGGCGACCTTGCACACCAACGATGCGGTGTC GGCGGTCAATCGCTTGATCGATATGGGCGTTGAACCGTTTCTGTTGGCTTCGTCATTGCTCGGCGTGTTGGCCCAGCGCC TGGTGCGCCGCCTGTGCCCGCACTGCAAGCAGGAGGACCCTGCGGCGCCCGGCACCTGGCGCCCGGTGGGCTGTGCGCAG TGCAACCAGATCGGCTACAGCGGGCGTACCGGTATCCATGAATTGTTTTGCGTCGACGACGATGTGCGCAGCCTGATCCA CCAGGGCGCCAACGAGCAGGACTTGCGCCTGGCCGCACGCCGCGCCGGGATGTTCAGCATGCGTGAAGACGGCGAACGCT GGGTGCGCAGCGGTGCCACCGCGCCCGAAGAAATCCTGCGCGTGACACGGGACGCCTGA Protein sequence : MSLLPYAWAKSQRILLRPGENGMLLTVCPSTPGWSISEVQRQFGQSQVEQIRDDELDGLLASAYADTGSAAAVVGAAENE VDLDRLMQDMPEITDLLDTQDGAPVIRMINALLTQAARDEASDIHIEPYETHSVVRYRVDGTLRDVVSPRKALHGALVSR IKIMAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRLQLETLGMEAQLLARLDTLIRQPHG IVLVTGPTGSGKTTSLYAALARLDASTSNILTVEDPVEYDLPGISQIQVNAKIDMTFGLALRAILRQDPDIIMIGEIRDL ETAQIAVQASLTGHLVLATLHTNDAVSAVNRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKQEDPAAPGTWRPVGCAQ CNQIGYSGRTGIHELFCVDDDVRSLIHQGANEQDLRLAARRAGMFSMREDGERWVRSGATAPEEILRVTRDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-107 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-107 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PFLU2424 | YP_002872026.1 | putative type II secretion pathway protein E | VFG0182 | Protein | 1e-118 | 62 |
| PFLU2424 | YP_002872026.1 | putative type II secretion pathway protein E | VFG2048 | Protein | 2e-107 | 57 |
| PFLU2424 | YP_002872026.1 | putative type II secretion pathway protein E | VFG1876 | Protein | 5e-114 | 51 |
| PFLU2424 | YP_002872026.1 | putative type II secretion pathway protein E | VFG2426 | Protein | 5e-78 | 48 |
| PFLU2424 | YP_002872026.1 | putative type II secretion pathway protein E | VFG0233 | Protein | 1e-83 | 48 |
| PFLU2424 | YP_002872026.1 | putative type II secretion pathway protein E | VFG0112 | Protein | 8e-80 | 44 |
