Gene Information

Name : gacA (PFLU2189)
Accession : YP_002871804.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Virulence
Product : two-component system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 2372682 - 2373323 bp
Length : 642 bp
Strand : +
Note : -

DNA sequence : 
TTGATTAGGGTGCTAGTAGTCGATGACCATGATCTCGTTCGTACAGGCATTACACGAATGCTGGCTGACATCGATGGCCT
GCAAGTAGTCGGCCAGGCCGAGTCAGGGGAAGAGTCCTTGATCAAGGCCCGGGAGTTGAAGCCCGATGTGGTGCTGATGG
ACGTCAAGATGCCCGGTATCGGCGGTCTCGGCGCCACGACCAAGTTGTTGCGCAGCCATCCGGATATCAAAGTCGTCGTG
GTGACGGTGTGTGAAGAAGACCCGTTTCCGACACGCCTGTTGCAGGCCGGAGCGGCCGGTTACCTGACCAAGGGCGCTGG
GCTGGCCGAGATGGTACAAGCCATTCGCCTGGTATTTGCCGGCCAGCGTTACATCAGCCCGCAAATCGCCCAGCAATTGG
CCATCAAGTCTTTCCAGCCCACCAGCGACTCGCCGTTCGATGCGTTGTCGGAGCGGGAAATCCAGATCGCCTTGATGATC
GTCGGTTGCCAGAAGGTGCAGACGATCTCCGACAAGCTGTGCCTGTCGCCCAAGACCGTCAACACCTACCGCTATCGCAT
TTTCGAGAAGCTCGCCATCAGCAGTGATGTTGAATTGACCCTGCTCGCAGTGCGCCACGGCATGGTGGACGCCAGCGCCT
GA

Protein sequence : 
MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGIGGLGATTKLLRSHPDIKVVV
VTVCEEDPFPTRLLQAGAAGYLTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTSDSPFDALSEREIQIALMI
VGCQKVQTISDKLCLSPKTVNTYRYRIFEKLAISSDVELTLLAVRHGMVDASA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 1e-51 57
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 1e-51 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gacA YP_002871804.1 two-component system response regulator VFG1889 Protein 2e-50 54