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Name : PFLU1878 (PFLU1878) Accession : YP_002871513.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Unknown Product : putative integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 2050736 - 2052049 bp Length : 1314 bp Strand : + Note : - DNA sequence : ATGGCTCTGACAGATACAGCGATCAAGCAAGCCAAGCCCGCCAGCAAGCCTTATACGTTAACTGATGGGGATGGCTTATC GCTGCAGGTGCCCACGACGGGTTCGAAGCGCTGGCATTTCCGTTTCTATTGGCATGACAAACAATTGCGTATTTCCCTTG GCACCTATCCCGACGTGAGTCTCAAGGAGGCTCGTCGGCGGAGAGAGGCTGCGCGTGCGCTGGTGGCCAGCAATATCGAT CCCCGATCGCATCGTCGCGCCGAGCGCCAGAAAGCCTCTCGCGCCGTCAAAAACACGTTTGAAGCGGTTGCTGATCGCTG GCATGAGTTCCGAAGTAAAAAGCTAACGAAAAGTAAGAAGGGCAGTGCAGGGCAAGCCAGCAAATACCTGAAGAAGGACA TGCTGCCGTGTTTGGGCGATCTTCCGATCGCGGATATTTCTCGTGGTGACGTGCTGGAGCTCATTAGACGAATTGAGCGC AGAGGCGCGCTAGTCTCTGCTCGAAAGGTGCGCACCTGGCTCAACCAGATCTTTCGTTTCGCTATGGCGGAAGGGCTTAT TGATGTGAACCCAGCAGCAGACCTTGATATCGTTGCCGAGACGCCGCGGCCAGTCCGCCATAATCCCTTCCTCCAAGTAA ATGAACTTCCAGGATTGCTCAGGACCGTCACCCACTATGAGGGTGCAGAAAAGACACGGCTTGGTATTCGTCTACTGCTG CTGACGGGCGTGCGTACAGGAGAGCTACGGGCGGCGACGCCAGACCAATTCGACTTCGACAAGGGGATCTGGCGGGTGCC GCCGGAGGGTGTGAAGCAGCTCCGAAATCGTGTGCGAACACAGGGAAATGAGATTCCACCTTATGTGATTCCGCTGTCTA CTCAAGCAATTGCAATTGTGCAACGGCTGATGCAGTTAAGGACGCGCGGTGCACGGTATCTGCTGGTTCACCGATACGAA CCGCAGGAAATGATCAGTGAAAATACCCTTAACACCGCGATTAGCCGGATGGGTTACAAAGGGAGGCTCACCGGTCATGG CATCAGGGCCACCATCTCAACGGCGCTCAACGAGGTTGGCTTTGTAGAAGAATGGATTGAGGCGCAGCTTTCCCACGCTG ATTCGAACCAAATTCGGGCTGCGTACAATCATGCAGAATACGTCGAGCCGAGACGTAGGATGATGCAATACTGGGCGGAT TTATTAGATGCACTAGAGGTCGGTGTTCCGCCGCCTACGCCCGGAGCATACATGCCGCAGATCGGCCGAGCTCCAACGGA TTTTCTGAGAACGCAGCGGGAATCTGCTAATTAG Protein sequence : MALTDTAIKQAKPASKPYTLTDGDGLSLQVPTTGSKRWHFRFYWHDKQLRISLGTYPDVSLKEARRRREAARALVASNID PRSHRRAERQKASRAVKNTFEAVADRWHEFRSKKLTKSKKGSAGQASKYLKKDMLPCLGDLPIADISRGDVLELIRRIER RGALVSARKVRTWLNQIFRFAMAEGLIDVNPAADLDIVAETPRPVRHNPFLQVNELPGLLRTVTHYEGAEKTRLGIRLLL LTGVRTGELRAATPDQFDFDKGIWRVPPEGVKQLRNRVRTQGNEIPPYVIPLSTQAIAIVQRLMQLRTRGARYLLVHRYE PQEMISENTLNTAISRMGYKGRLTGHGIRATISTALNEVGFVEEWIEAQLSHADSNQIRAAYNHAEYVEPRRRMMQYWAD LLDALEVGVPPPTPGAYMPQIGRAPTDFLRTQRESAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| int | AAN62223.1 | putative integrase | Not tested | PAGI-3(SG) | Protein | 2e-89 | 56 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 3e-55 | 42 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 2e-58 | 42 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 1e-50 | 41 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 4e-57 | 41 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 4e-57 | 41 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 5e-57 | 41 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 5e-57 | 41 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 1e-57 | 41 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 4e-58 | 41 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 7e-57 | 41 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 7e-57 | 41 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 5e-57 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PFLU1878 | YP_002871513.1 | putative integrase | VFG0783 | Protein | 2e-57 | 41 |
| PFLU1878 | YP_002871513.1 | putative integrase | VFG0598 | Protein | 3e-57 | 41 |
