Gene Information

Name : gabD (PFLU0180)
Accession : YP_002869875.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Unknown
Product : succinate-semialdehyde dehydrogenase I
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.16
Position : 203618 - 205060 bp
Length : 1443 bp
Strand : +
Note : catalyzes the formation of succinate from succinate semialdehyde; NADP dependent

DNA sequence :
ATGCAGCTCAAAGATTCCCAGTTGTTCCGCCAACAAGCCTTTATCGATGGCGCTTGGGTCGATGCGGACAATGGTCAGAC
CATCAAGGTCAACAACCCTGCCACCGGTGAGATTCTCGGCACCGTGCCGAAGATGGGTGCCGCCGAAACCCGCCGTGCCA
TCGAAGCTGCCGATAAGGCCCTGCCGGCCTGGCGGGCACTGACCGCCAAGGAGCGCGCCAATAAGCTGCGCCGTTGGTTT
GAGCTGCTGATCGAAAACCAGGAAGACCTCGGTCGCCTGATGACTCTCGAGCAAGGCAAACCGCTGGCCGAAGCCAAGGG
CGAGATCGTCTATGCCGCGTCCTTCATCGAGTGGTTCGCCGAAGAAGCTAAGCGCATCTACGGTGACGTGATTCCTGGCC
ACCAGCCGGACAAGCGCCTGATCGTGATCAAGCAGCCGATCGGTGTGACCGCTGCGATCACCCCGTGGAACTTCCCAGCC
GCGATGATCACCCGTAAAGCCGGCCCGGCGCTGGCCGCCGGGTGCACCATGGTGATCAAGCCGGCTTCTCAAACCCCGTT
CTCAGCCCTGGCCTTGGTTGAGCTGGCACACCGTGCTGGCATCCCGAAAGGTGTGCTGAGTGTGGTGACCGGCAGCGCCG
GCGACATCGGTGGCGAGCTGACCAGCAACCCGATCGTGCGCAAATTGTCCTTCACGGGCTCGACCGAAATCGGTCGCCAG
CTCATGGCCGAATGCGCCAAGGACATCAAGAAAGTCTCCCTGGAACTGGGCGGCAACGCGCCGTTCATCGTGTTCGACGA
CGCCGATCTGGATAAGGCCGTCGAAGGCGCGATCATCTCCAAGTACCGTAATAACGGCCAGACCTGCGTCTGTGCCAACC
GCCTGTACATCCAGGATTCGGTGTACGACGCGTTCGCGGAAAAACTCAAAGTGGCGGTGGCCAAGTTGAAGATCGGCAAC
GGTCTGGAAGAAGGCACCACCACGGGCCCGCTGATCGACGAAAAAGCTGTGGCCAAGGTCCAGGAACACATCGCCGATGC
CCTGAGCAAAGGCGCCAAGCTGTTGGCCGGTGGCAAGGTGATGGAAGGCAACTTCTTCGAGCCGACTATCCTGGTCGACG
TGCCGAAAAACGCCGCCGTCGCGAAGGAAGAAACCTTCGGCCCACTGGCGCCGCTGTTCCGTTTCAAAGATGAAGCTGAA
GTGATCGCGATGTCCAACGACACCGAGTTCGGCCTGGCTTCCTACTTCTATGCCCGCGACCTGGGCCGTGTGTTCCGTGT
GGCTGAAGCCTTGGAATACGGCATGGTCGGCGTCAACACCGGGTTGATCTCCAACGAAGTCGCGCCGTTCGGCGGTATCA
AGGCCTCGGGCCTGGGCCGTGAAGGTTCCAAGTACGGGATCGAGGATTACCTGGAAATCAAATACCTCTGCCTGGGCATC
TAA

Protein sequence :
MQLKDSQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKALPAWRALTAKERANKLRRWF
ELLIENQEDLGRLMTLEQGKPLAEAKGEIVYAASFIEWFAEEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPA
AMITRKAGPALAAGCTMVIKPASQTPFSALALVELAHRAGIPKGVLSVVTGSAGDIGGELTSNPIVRKLSFTGSTEIGRQ
LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDSVYDAFAEKLKVAVAKLKIGN
GLEEGTTTGPLIDEKAVAKVQEHIADALSKGAKLLAGGKVMEGNFFEPTILVDVPKNAAVAKEETFGPLAPLFRFKDEAE
VIAMSNDTEFGLASYFYARDLGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 AAO17183.1 Orf17 Not tested tcd island Protein 8e-157 67