Name : gabD (PFLU0180) Accession : YP_002869875.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase I Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 203618 - 205060 bp Length : 1443 bp Strand : + Note : catalyzes the formation of succinate from succinate semialdehyde; NADP dependent DNA sequence : ATGCAGCTCAAAGATTCCCAGTTGTTCCGCCAACAAGCCTTTATCGATGGCGCTTGGGTCGATGCGGACAATGGTCAGAC CATCAAGGTCAACAACCCTGCCACCGGTGAGATTCTCGGCACCGTGCCGAAGATGGGTGCCGCCGAAACCCGCCGTGCCA TCGAAGCTGCCGATAAGGCCCTGCCGGCCTGGCGGGCACTGACCGCCAAGGAGCGCGCCAATAAGCTGCGCCGTTGGTTT GAGCTGCTGATCGAAAACCAGGAAGACCTCGGTCGCCTGATGACTCTCGAGCAAGGCAAACCGCTGGCCGAAGCCAAGGG CGAGATCGTCTATGCCGCGTCCTTCATCGAGTGGTTCGCCGAAGAAGCTAAGCGCATCTACGGTGACGTGATTCCTGGCC ACCAGCCGGACAAGCGCCTGATCGTGATCAAGCAGCCGATCGGTGTGACCGCTGCGATCACCCCGTGGAACTTCCCAGCC GCGATGATCACCCGTAAAGCCGGCCCGGCGCTGGCCGCCGGGTGCACCATGGTGATCAAGCCGGCTTCTCAAACCCCGTT CTCAGCCCTGGCCTTGGTTGAGCTGGCACACCGTGCTGGCATCCCGAAAGGTGTGCTGAGTGTGGTGACCGGCAGCGCCG GCGACATCGGTGGCGAGCTGACCAGCAACCCGATCGTGCGCAAATTGTCCTTCACGGGCTCGACCGAAATCGGTCGCCAG CTCATGGCCGAATGCGCCAAGGACATCAAGAAAGTCTCCCTGGAACTGGGCGGCAACGCGCCGTTCATCGTGTTCGACGA CGCCGATCTGGATAAGGCCGTCGAAGGCGCGATCATCTCCAAGTACCGTAATAACGGCCAGACCTGCGTCTGTGCCAACC GCCTGTACATCCAGGATTCGGTGTACGACGCGTTCGCGGAAAAACTCAAAGTGGCGGTGGCCAAGTTGAAGATCGGCAAC GGTCTGGAAGAAGGCACCACCACGGGCCCGCTGATCGACGAAAAAGCTGTGGCCAAGGTCCAGGAACACATCGCCGATGC CCTGAGCAAAGGCGCCAAGCTGTTGGCCGGTGGCAAGGTGATGGAAGGCAACTTCTTCGAGCCGACTATCCTGGTCGACG TGCCGAAAAACGCCGCCGTCGCGAAGGAAGAAACCTTCGGCCCACTGGCGCCGCTGTTCCGTTTCAAAGATGAAGCTGAA GTGATCGCGATGTCCAACGACACCGAGTTCGGCCTGGCTTCCTACTTCTATGCCCGCGACCTGGGCCGTGTGTTCCGTGT GGCTGAAGCCTTGGAATACGGCATGGTCGGCGTCAACACCGGGTTGATCTCCAACGAAGTCGCGCCGTTCGGCGGTATCA AGGCCTCGGGCCTGGGCCGTGAAGGTTCCAAGTACGGGATCGAGGATTACCTGGAAATCAAATACCTCTGCCTGGGCATC TAA Protein sequence : MQLKDSQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKALPAWRALTAKERANKLRRWF ELLIENQEDLGRLMTLEQGKPLAEAKGEIVYAASFIEWFAEEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPA AMITRKAGPALAAGCTMVIKPASQTPFSALALVELAHRAGIPKGVLSVVTGSAGDIGGELTSNPIVRKLSFTGSTEIGRQ LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDSVYDAFAEKLKVAVAKLKIGN GLEEGTTTGPLIDEKAVAKVQEHIADALSKGAKLLAGGKVMEGNFFEPTILVDVPKNAAVAKEETFGPLAPLFRFKDEAE VIAMSNDTEFGLASYFYARDLGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 8e-157 | 67 |