|
Name : kdpB (PFLU1677) Accession : YP_002871315.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Unknown Product : potassium-transporting ATPase subunit B Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : 3.6.3.12 Position : 1839924 - 1841975 bp Length : 2052 bp Strand : + Note : One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions DNA sequence : ATGCCTGCAAAAAACGCGGCCCCGGTCAAAACCCAGGAGCCCGCCAAAACCGCCATTTCAGCCCTGTGGCGCCCGGCGCT GGTCCAGGCGTTCGTCAAGCTGGACCCGCGTCAACTGCAACGCTCGCCGGTGATGCTGGTGGTCGAGCTGACCGCCATCC TCACCACCGTGCTGTGCTTCGTGCCTGACACCGCCGTGCCGACGTTCGTCGCGGTGCAGATTGCCGTGTGGTTGTGGTTC ACCGTGCTCTTCGCCAACTTCGCCGAAGCCTTGGCCGAAGGGCGTGGCAAAGCGCGTGCCGACAGCCTCAAGGCCGGCAG TGAAGGCCTGAGCGCACGCCACAAGGAAGCCGATGGCAGCTTCAAGGTCGTGCCGGCCACCAGCCTGCGCAAAGGCGATG TGGTGCGCGTCGCCGCCGGGGAAATGATCCCTGGGGACGGCGAAGTCATCGAAGGTATTGCGGCGGTCAACGAAGCGGCG ATCACCGGGGAATCCGCACCGGTGATCCGTGAGTCCGGCGGCGACCGTTCGGCCGTCACCGGCAACACTCGCCTGGTCTC GGATTGGCTGCTGATCCGCATCACCGCCAACCCCGGCGAGTCCACACTCGACCGCATGATCGCCTTGGTGGAAGGCGCCA AACGCCAGAAAACCCCCAACGAAGTCGCGCTGGATATCCTGCTGATCGGCCTGACCCTGATCTTCCTGTTGGTGGTGGTG ACCCTGCAACCGTTCGCCCACTTCGCCAATGGCAGCTTGCCGCTGGTGTTCCTGGTCGCACTGCTGGTGACGCTGATTCC TACCACCATCGGCGGCTTGTTGTCGGCCATCGGTATCGCCGGCATGGACCGTCTGGTGCGCCTCAATGTCATCGCCAAGT CCGGGCGTGCCGTGGAAGCGGCGGGCGACGTGCATGTGTTGCTGCTGGACAAGACCGGCACCATTACCTTTGGTAACCGT CGCTGCGCGGCGGTGGTCGCGGCGCCTGGCGTCAGTGGCAAGGAAGTGGCCGAAGGCGCGTTGTTTGCCTCGCTGGCGGA TGACACGGCGGAAGGTAAGTCCATCGTCGAATACCTGCGCGCCTTGCACCCTCAGGCCGAGCCGACTGCGGACGAGCTGA CGGCCGTGCCGTTCAGTGCCGAAACGCGGTTGTCCGGTGTCGATTATCAGGGCCGCGTATTTCGCAAAGGCGCGGTGGAT TCGCTGTTGGCGTTCATCGGTCTACAACGTCGCGACCTGCAGCCCGCGCTGTCGCGGGAAATCGACAAGATCGCCCAAAG CGGCGGCACCCCGTTGCTGGTGTGTGCCGATGGCAAGTTGCTCGGCGCGATCCATCTGAAGGACGTGGTCAAGCCCGGCA TTCGTGAGCGTTTCGCTGAACTGCGCAAACTGGGCATCCGCACCGTAATGGTCACCGGCGACAACCCGCTGACCGCTGCC GCGATTGCGGCCGAAGCGGGCGTGGATGATGTGCTGGCCGAAGCCACGCCGGAGAAAAAACTCGCGCGCATTCGCCATGA ACAGAACGACGGTCGCCTGGTGGCGATGTGCGGTGACGGCGCCAATGACGCCCCGGCGCTGGCCCAGGCGGACGTCGGCA TGGCCATGAATGACGGCACTCAGGCCGCTCGCGAAGCCGCCAACATGGTCGACCTCGACAGCGACCCGACCAAGCTGTTG GACGTGGTGCAGATCGGCAAGGAATTGCTGGTGACCCGTGGCGCGCTGACCACCTTCTCCATCGCCAACGACGTGGCCAA GTACTTCGCGATCCTGCCGGCGTTGTTCGCCTCGATCTACCCGCAACTCGGCGTGCTCAACGTGATGCACTTGCAGAGCC CGCAGAGCGCGATTCTCTCCGCCATCGTGTTTAACGCCTTGATCATTGTGGTGCTGATTCCGTTGGCGCTGCGCGGTGTG CGTGTGCAGGCGGCGAGTGCGGCGGCGTTGCTGCGGCGCAACCTGTTGATCTACGGGCTGGGCGGGATTCTGGTGCCGTT CGTGGGCATCAAGGCGATCGACATGCTGCTGACTGCGCTGCACCTGGTGTAA Protein sequence : MPAKNAAPVKTQEPAKTAISALWRPALVQAFVKLDPRQLQRSPVMLVVELTAILTTVLCFVPDTAVPTFVAVQIAVWLWF TVLFANFAEALAEGRGKARADSLKAGSEGLSARHKEADGSFKVVPATSLRKGDVVRVAAGEMIPGDGEVIEGIAAVNEAA ITGESAPVIRESGGDRSAVTGNTRLVSDWLLIRITANPGESTLDRMIALVEGAKRQKTPNEVALDILLIGLTLIFLLVVV TLQPFAHFANGSLPLVFLVALLVTLIPTTIGGLLSAIGIAGMDRLVRLNVIAKSGRAVEAAGDVHVLLLDKTGTITFGNR RCAAVVAAPGVSGKEVAEGALFASLADDTAEGKSIVEYLRALHPQAEPTADELTAVPFSAETRLSGVDYQGRVFRKGAVD SLLAFIGLQRRDLQPALSREIDKIAQSGGTPLLVCADGKLLGAIHLKDVVKPGIRERFAELRKLGIRTVMVTGDNPLTAA AIAAEAGVDDVLAEATPEKKLARIRHEQNDGRLVAMCGDGANDAPALAQADVGMAMNDGTQAAREAANMVDLDSDPTKLL DVVQIGKELLVTRGALTTFSIANDVAKYFAILPALFASIYPQLGVLNVMHLQSPQSAILSAIVFNALIIVVLIPLALRGV RVQAASAAALLRRNLLIYGLGGILVPFVGIKAIDMLLTALHLV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 9e-151 | 59 |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 7e-151 | 59 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 2e-126 | 54 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 8e-126 | 54 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 1e-125 | 54 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 1e-125 | 54 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 1e-125 | 54 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 1e-125 | 54 |
