Gene Information

Name : lolD (PFLU1573)
Accession : YP_002871214.1
Strain : Pseudomonas fluorescens SBW25
Genome accession: NC_012660
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1725947 - 1726630 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTGAAAAAGCAATCCTGAGCTGCCGCAACCTGGGCAAATCCTACGAGGAAGGCCCGGAATCGGTGGTGGTGTTGTC
CAACCTGCAACTTGAGCTGCACCCTGGCGAACGCGTGGCGATCGTCGGCAGTTCCGGTTCCGGCAAAAGTACCTTGCTGA
ACCTGCTGGGCGGCCTTGATACGCCGTCCCAGGGCAGCGTGTGGCTGGCCGGTGAAGAGCTGTCGGCCCTCGGTGAGAAG
GCTCGTGGGCAACTGCGCAACCGTTCGTTGGGCTTTGTGTACCAGTTCCACCATTTGCTGCCGGAATTCACCGCCCTGGA
AAACGTGTGCATGCCGCTGTTGATCGGCAAGACCGCGATCCCGCAAGCCCGCCAGCGTGCCCAGGCCCTGCTGGAGCGTG
TCGGCCTCGGCCATCGCCTGGAGCACAAGCCGGCGGAGCTGTCCGGCGGCGAGCGTCAGCGTGTGGCGATTGCCCGTGCC
CTGGTCAACAACCCAGGCCTGGTGATGCTCGATGAGCCCACCGGCAACCTCGACTCCCACACCGCCCAGGGCATCAAGGA
CTTGATGCTGGAACTGAGCACCCAGATGCGCACCGCGTTCCTGGTGGTGACCCATGACATGAGCATGGCCCGGCAGATGG
ACCGCGTGTTGCACCTGCAGGAAGGTCATCTGGTCGCCATCTGA

Protein sequence : 
MSEKAILSCRNLGKSYEEGPESVVVLSNLQLELHPGERVAIVGSSGSGKSTLLNLLGGLDTPSQGSVWLAGEELSALGEK
ARGQLRNRSLGFVYQFHHLLPEFTALENVCMPLLIGKTAIPQARQRAQALLERVGLGHRLEHKPAELSGGERQRVAIARA
LVNNPGLVMLDEPTGNLDSHTAQGIKDLMLELSTQMRTAFLVVTHDMSMARQMDRVLHLQEGHLVAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_002871214.1 lipoprotein releasing system ATP-binding protein NC_012469.1.7686878. Protein 2e-40 45
lolD YP_002871214.1 lipoprotein releasing system ATP-binding protein NC_008702.1.4606598. Protein 1e-33 43