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Name : PFLU1093 (PFLU1093) Accession : YP_002870753.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Virulence Product : putative fimbrial outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 1209777 - 1212371 bp Length : 2595 bp Strand : + Note : - DNA sequence : ATGTTGAATACGTCGAAGGTGAAAAGTGCACTCCGCCCAAGCCTTTTTGGCGGGTTGATGTCACTGGCAGGCACTGTATT GGGTGCCGGAGATATAGAGTTTAATACCGACGTTCTTGATCTTAATGATCGCACGAATATCGACTTGTCTCAGTTTGCGC GCAGCGGCTTTATTCTGCCTGGCACTTACTCGATGGTGGTGCAGATCAATACTCAGGCCATTGCGGAACAATCGGTGGCG TTTTATCCCCCCGATGATGATCCCAAAGGGAGCGAGGCCTGTTTATCACCCGAATTGGTAGAACAGTTGGGCCTGAAAAC GTCCGGTGCCGCCAAACTGACTTGGTGGAACGGCGGACGCTGCCTGGATATCACTGGCTTGCCGGGTATGGAGGTGAGTG GAGATTTAGCCACTTCTACGCTGAACATCAGTCTTCCCCAAGCCTACCTTGAGTACAGCGCCATTAATTGGGATCCGCCC TCCCGCTGGGACGAGGGCGTGCCGGGCTTGTTGGTTGACTACAACATGACGGCGCAGTCGAGTTATCAAAAGGATGAGCG CAACCGTAATAACTTCAGTGGGAACGGAACACTCGGTGCCAATGCCGGGGCGTGGCGCCTGAGAGCTGATTGGCAGGGGC GCGTCGAGAGCGGCCGCGAGCGGTCCTACAAGGATCAAAAGCTGGAGTGGAGCCGTTACTACGCTTACCGCGCGGTGCCT GCGTTGAAGGCGCGTTTGGTGGTGGGCGAGGACTATCTGTATTCGGACCTGTTCGACAGTTTCCGTTTTACCGGTGCCTC GCTCAATTCGGATGAAAGCCAGTTGCCGCCTAACTTGCGCGGCTATGCACCTGAAGTGGTCGGGGTGGCCAAGACCAACG CGAAAGTCGTCATCAGCCAGAAGGGACGCGTGTTGTACGAAACCCTGGTGGCGGCAGGGCCGTTTCGCATTCAAGACCTG CGGGATGCAGTATCCGGCACGCTGGATGTGCGGGTGGAGGAGCAGGATGGTTCGGTGCGCAGCTTCCAGATCGACACGGC GGGTGTTCCTTACCTGACGCGCCCCGGGCAAGTGCGTTACAAGCTGGCGACTGGGCGGCCGTCCAACCTTCAGTACGGCG CTGACGGAGATTTTTTCGGCACGGGAGAGTTCTCTTGGGGGGTCAGTAATGGCTGGTCCCTGTTTGGCGGCGGCATGACG GATAACAACTACCGGGCGGTTTCCGTGGGTGCGGGTCGCGACCTGCTGGCATTCGGGGCCATATCGTTGGACGTGACGCA GTCTCGCGCCGAGCTCTGGAACGAGACGCTCTCGGGAAAATCGTACCGCCTTCAATACTCCAAGCACTTTGAACAATACG ACAGCCAAGTCACCTTCGCGGGCTATCGGTTTTCCGAGAAGAACTTTTTGAGTATGAGTGAATACCTGGATGCTCGTCAT TACGGGTTGAACGGCGAGCTCAGCAGTCGTAGCGAACTCACCGACGGCTGGAAGCCGATTGGCGGCAGCAAGGCGCTGTA TACCGCGACGGTTAACAAGCAGTTCCGGGACCTGGGGGCCACTGTTTACGCCAGTTACAGCAAACAAACGTACTGGGAGC GGCCGGCCACTCAGCGCTGGAACATGTCGGTGTCACGCTACTTCAGCGTGGGCTCCGTCAAGAATATGAGCCTGTCCCTG AACCTGTACCGCAGTCAGGAATACAGCCATAAAGATAACGGCGTAGCGCTGACCGTCAGTCTGCCGTTGGGACGCAGCGG CACGCTGTCGCTGGATGCCAATAGAGCCGCGGGTGAGAACAACTTTTCCACCCGTTACAGCGATCGCTTCGATGAGCGCA ACAGCTACCAGCTCAGTGCCGGCGACACATCCGCCAGTGGTTATTTGAGTCATATCGGTGACCAGGCGGACATTGATCTC AGTGTCAGCACCCAAGAGGGCAATTACAGCAGCCTGGGTGTGTCTGCGCGCGGGGGGGGCACGCTCACGCCTTACGGTGG GGCACTGCATCGTTCCAGCAGTACCGGCGGAACCCGTTTGATGGTCGACACCGGCGGTGTGCCCGATGTGCCTGTGCGGG CTTACGGCACTCCGACCCGCACTAATGCCTTCGGCAAGGCAGTCATCTCCGACATCGGCAGTTATCAGCGCACGGCGGCC AGTGTTGACCTGGAGAACTTGCCTGGCAACGTCGAAGCCACTCAATCAGTGACGCAACTGACGCTCACCGAGGGCGCTAT TGGTTACCGGTCGCTGGAGGTGATTGCCGGTGAGAAGGCCATGGCTGTTCTTCGCCTGCAGGACGGCAGTTCACCCCCCT TCGGCGCGACGGTGAAGAACCTCAAGCAGCAGGACACCGGCATCGTCAACGACGGCGGCAATGTCTACCTGAGCGGTATA CAGGCCGGCAAACAGATGATCGTCAGTTGGGGCGGTAGCGAGCAATGCGTCCTTACGCTCCCGGCCATTTTGCCCGCGGA TGCGTTGACCAACGCCCTCGAACTGAGCTGCCAGAGCGTCGCCACTGATCAATCCTTGCCCGAACCAGCAACGCTGACCG GGAAGCCAATTAATACGGAGAACACATCCTCATGA Protein sequence : MLNTSKVKSALRPSLFGGLMSLAGTVLGAGDIEFNTDVLDLNDRTNIDLSQFARSGFILPGTYSMVVQINTQAIAEQSVA FYPPDDDPKGSEACLSPELVEQLGLKTSGAAKLTWWNGGRCLDITGLPGMEVSGDLATSTLNISLPQAYLEYSAINWDPP SRWDEGVPGLLVDYNMTAQSSYQKDERNRNNFSGNGTLGANAGAWRLRADWQGRVESGRERSYKDQKLEWSRYYAYRAVP ALKARLVVGEDYLYSDLFDSFRFTGASLNSDESQLPPNLRGYAPEVVGVAKTNAKVVISQKGRVLYETLVAAGPFRIQDL RDAVSGTLDVRVEEQDGSVRSFQIDTAGVPYLTRPGQVRYKLATGRPSNLQYGADGDFFGTGEFSWGVSNGWSLFGGGMT DNNYRAVSVGAGRDLLAFGAISLDVTQSRAELWNETLSGKSYRLQYSKHFEQYDSQVTFAGYRFSEKNFLSMSEYLDARH YGLNGELSSRSELTDGWKPIGGSKALYTATVNKQFRDLGATVYASYSKQTYWERPATQRWNMSVSRYFSVGSVKNMSLSL NLYRSQEYSHKDNGVALTVSLPLGRSGTLSLDANRAAGENNFSTRYSDRFDERNSYQLSAGDTSASGYLSHIGDQADIDL SVSTQEGNYSSLGVSARGGGTLTPYGGALHRSSSTGGTRLMVDTGGVPDVPVRAYGTPTRTNAFGKAVISDIGSYQRTAA SVDLENLPGNVEATQSVTQLTLTEGAIGYRSLEVIAGEKAMAVLRLQDGSSPPFGATVKNLKQQDTGIVNDGGNVYLSGI QAGKQMIVSWGGSEQCVLTLPAILPADALTNALELSCQSVATDQSLPEPATLTGKPINTENTSS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 3e-163 | 45 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 3e-157 | 44 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 4e-156 | 44 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 6e-156 | 44 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 3e-157 | 44 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 4e-157 | 44 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 4e-157 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PFLU1093 | YP_002870753.1 | putative fimbrial outer membrane usher protein | VFG1548 | Protein | 2e-157 | 44 |
| PFLU1093 | YP_002870753.1 | putative fimbrial outer membrane usher protein | VFG0884 | Protein | 1e-157 | 44 |
| PFLU1093 | YP_002870753.1 | putative fimbrial outer membrane usher protein | VFG0895 | Protein | 2e-157 | 44 |
