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Name : kdsD (PFLU0887) Accession : YP_002870550.1 Strain : Pseudomonas fluorescens SBW25 Genome accession: NC_012660 Putative virulence/resistance : Virulence Product : arabinose 5-phosphate isomerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.13 Position : 995373 - 996347 bp Length : 975 bp Strand : - Note : - DNA sequence : ATGAGCCAATCCAGCGACCTTATTCAATCCGCACAACGCACAATCCGCCTCGAGCTTGAAGCCGTAGAAGGCTTGCTGGC GCATATCGACGCAGATTTCGTACGCGCCTGCGAGATGATTCTGGCCAGCAAGGGCCGCGTTGTCGTGGTCGGCATGGGCA AGTCAGGCCACGTTGGCAACAAGATCGCCGCCACCCTGGCCAGCACCGGGACCACCGCGTTTTTCGTGCACCCCGCCGAA GCCAGTCACGGCGACATGGGCATGATCACCAAGGATGACATCATCCTGGCGTTGTCCAACTCCGGCAGCACCAACGAAAT CGTGACCCTGTTGCCGCTGATCAAGCGCCTGGGCATCCAGATGATCAGCATCACCGGCAACCCGGAATCGACGCTGGCCA AGGCCGCCGAAGTCAACCTCAACGTTCACGTGGACCACGAAGCCTGCCCGCTGAACCTGGCGCCGACTTCCTCCACCACT GCCGCCCTGGTGATGGGTGATGCCCTGGCCGTGGCACTGCTGGAGGCGCGTGGATTTACCGCCGAGGACTTTGCGTTTTC GCACCCGGGGGGCGCCCTGGGCCGCCGCCTGCTGCTGAAAGTGGAAAACGTCATGCACTCGGGTGATGAGTTGCCCCATG TCCAGCGCGGTACCCTGCTGAAGGACGCGCTGATGGAAATGACTCGCAAGGGCTTGGGCATGACGGTGATCCTGGAAGCC GATGGCCGCCTGGCAGGGGTGTTCACCGACGGTGACTTGCGCCGCACCCTGGACCGCACCATCGATATCCACACCGCCAG CATCGACGCAGTGATGACACCTCACGGCAAGACCGCGCGCCCCGAAATGCTGGCAGCCGAGGCGTTGAAAATCATGGAAG ACCACAAGATCGGCGCACTGGTGGTGGTCGATGGCGACGACCGCCCGATTGGCGCCCTGAACATGCACGACTTGCTGCGT GCGGGAGTGATGTAA Protein sequence : MSQSSDLIQSAQRTIRLELEAVEGLLAHIDADFVRACEMILASKGRVVVVGMGKSGHVGNKIAATLASTGTTAFFVHPAE ASHGDMGMITKDDIILALSNSGSTNEIVTLLPLIKRLGIQMISITGNPESTLAKAAEVNLNVHVDHEACPLNLAPTSSTT AALVMGDALAVALLEARGFTAEDFAFSHPGGALGRRLLLKVENVMHSGDELPHVQRGTLLKDALMEMTRKGLGMTVILEA DGRLAGVFTDGDLRRTLDRTIDIHTASIDAVMTPHGKTARPEMLAAEALKIMEDHKIGALVVVDGDDRPIGALNMHDLLR AGVM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 5e-57 | 44 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 3e-57 | 44 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 8e-57 | 44 |
