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Name : BAA_A0035 (BAA_A0035) Accession : YP_002860734.1 Strain : Genome accession: NC_012656 Putative virulence/resistance : Unknown Product : group II intron reverse transcriptase/maturase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : - Position : 31389 - 33320 bp Length : 1932 bp Strand : - Note : identified by match to protein family HMM PF00078; match to protein family HMM PF01844 DNA sequence : ATGAATGGCAATTCTAAGTCCGCGCCAAAGGGGAAGAAACTAAGACACAACGAATACTACGGTATTCAACCTGTCCTAGA TAACTTATACCAAAAAGCAACAAAGGGAAATTCTTTCAAAAACCTAATGTCTATCATTATATCAGACGAAAATATACTTC TCGCCTACCGCAATATTAAGGGGAACAAAGGAAGTAGAACTGCAGCTTGTGATAATGTAAATATAAAGAATATTGAGGGA ATGGAACAAAGCTATTTCTTGAATGAAGTTAAAAGACGCTTTCAAAACTACCAACCGCAGAAAGTAAGACGTAAAGAAAT TTCGAAGCCCAACGGACAAACCAGACCCCTGGGAATACCGGCTATGTGGGATAGGATAATCCAACAGTGCATCTTACAAG TCATGGAGCCAATCTGCGAAGCGCACTTCAGTAACCGAAGTTATGGTTTTCGCCCAAACAGAAGTGCTGAACATGCCCTA GCAGATGCATCAGTGCGAGTAAATAAACAAAACCTTACATATGTAGTAGACGTAGACATTAAAGGGTTTTTTGACGAGGT AAATCACGTCAAGCTCATGCGTCAATTATGGACATTGGGTATCCGTGACAAACAACTTCTGGTCATTATCCGAAAAATAC TGAAAGCCCCAGTGCAAATGCCTGACGGCACAACAATGTTCCCGACTAAGGGCACCCCACAAGGCGGTATTCTTAGTCCT ATACTTGCCAACGTCAATCTTAATGAATTCGACTGGTGGATAAGTAGACAATGGGAGACATTCAAAGCTAAAAAGGTAAA ACCGAGATGCATGAGGGGAATTTGGTGCAATGACGTTGTAACGACACAACTCACCAAAACTTCCAAGATGAAACCAATGT ACATCGTAAGGTACGCAGATGACTTTAAAATCTTCACAAACACACGTAGTAATGCGGAGAAAATTTTCAAAGCGACTCAA ATGTGGTTAGAAGAACGTCTAAAACTGTCTATCTCAGCCGAAAAGTCTAAAGTAACCAATCTGACAAAGCAACAAAGTGA ATTCTTAGGTTTCACCCTCAAAGCTGTAAAGAAAGGTAAAAAGAAGAACGGCGACACACGATACATTGCAGTAACACACG TTTCCCCAAAAGCACTGGAAAAAACAAAACAAGATTTAGCAAAACAAGTGAGAAGAATACAGAAAACCCCAAACTCTAAT GAAACAATTAAGAGAATCAGCATATACAACAGCATGGTCATTGGTAAGCACAACTATTATAAAATAGCTACGCATGCCTC CCAGGATTTCAGTAAAATGAACCATAATCTTGACCACATAATGTATAACAGATTCCCTAAGTCAACAACTGGAGGTAAAA GCAACACAAATGGATACACGAATATAGGAGAATATAAAGGAAAAGACAAAGGTATTAAACCATATCTAAAGTCAAAAATG ACGAGATTTCTCATGAAACGTCCCATCCTACCAATCTCCTATATTCAACACAAAAACCCGATGATGAAAAAGCAAGCCAT TAACAAGTACACCGCAGAAGGACGAGCCCTGATACATAAAAACTTGGCAGACATAACCGAAGCGGAACTGAAATGGTTAA GAGAAAATCCAGTTATAAATGAACGGGCAACCGTAGAATACAATGACAACCGAATTTCTCTTTATGTCGCACAAAAAGGC AAATGCAGTGTAACAGGTGAGAAACTCTTACCTTGGGACATTCATTGTCACCATAAGCGATTATGGAGTGAAACAAAGGA CGACAGCTACAAGAATCTTACCATCATCAAACCAAGTGTCCATAGACTAATACACGCAACCAAGATAGAAACCATAAACC AACTACTCAATGAACTCAAATTCAATGAGGAACAGTTAGGCAAACTCAATAAATTGCGAAAATTAGTCAAAAACGAGGAA ATCTGTATTTAA Protein sequence : MNGNSKSAPKGKKLRHNEYYGIQPVLDNLYQKATKGNSFKNLMSIIISDENILLAYRNIKGNKGSRTAACDNVNIKNIEG MEQSYFLNEVKRRFQNYQPQKVRRKEISKPNGQTRPLGIPAMWDRIIQQCILQVMEPICEAHFSNRSYGFRPNRSAEHAL ADASVRVNKQNLTYVVDVDIKGFFDEVNHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQMPDGTTMFPTKGTPQGGILSP ILANVNLNEFDWWISRQWETFKAKKVKPRCMRGIWCNDVVTTQLTKTSKMKPMYIVRYADDFKIFTNTRSNAEKIFKATQ MWLEERLKLSISAEKSKVTNLTKQQSEFLGFTLKAVKKGKKKNGDTRYIAVTHVSPKALEKTKQDLAKQVRRIQKTPNSN ETIKRISIYNSMVIGKHNYYKIATHASQDFSKMNHNLDHIMYNRFPKSTTGGKSNTNGYTNIGEYKGKDKGIKPYLKSKM TRFLMKRPILPISYIQHKNPMMKKQAINKYTAEGRALIHKNLADITEAELKWLRENPVINERATVEYNDNRISLYVAQKG KCSVTGEKLLPWDIHCHHKRLWSETKDDSYKNLTIIKPSVHRLIHATKIETINQLLNELKFNEEQLGKLNKLRKLVKNEE ICI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ef0012 | AAM75218.1 | EF0012 | Not tested | Not named | Protein | 2e-132 | 48 |
| EF2326 | NP_815981.1 | group II intron reverse transcriptase maturase | Not tested | Not named | Protein | 4e-134 | 47 |
