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Name : CLJ_0278 (CLJ_0278) Accession : YP_002860583.1 Strain : Genome accession: NC_012654 Putative virulence/resistance : Unknown Product : group II intron reverse transcriptase/maturase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : - Position : 245212 - 247092 bp Length : 1881 bp Strand : - Note : identified by match to protein family HMM PF00078 DNA sequence : ATGAGTAATGAAAAGTTTAAAAATAGAAAATTTAATAAAAAGAAACAGAAACTCAGAAATAATGAGTATTATGACATGCA AAGTATATTTGATGAATTATATAAGCAAAGTAAAGATGGAAAACAATTCAAAAATCTAATCAAAACTATAACAAGTAAAG AAAATATTCTATTAGCATACAGAAATATCAAGAAAAATGATGGGAGCCATACAAAAGGAACTAATCATAAAACTATAAAT GATATTGCTGGAGAAAGTGAAGATGAAATAATAGAATATGTAAGGAAAAGATTGAATAAATTTTATCCCCATAGTGTAAA AAGAATTTATATCCCTAAAAATAATGGAGATAAAAGACCTTTAGGAATACCCACAATAGAAGATAGGCTGATACAAAGAA GTATTTTACAAGTATTAGAGCCTATATGTGAAGCTAAATTTCACCCACATAGCTATGGTTTCAGACCAAATAGAAGTACA GAACATGCTATAGCTAGAGCAATGACTTTAATTAATATGAACAAATTGCATTATGTGGTTGATGTGGATATAAAGGGTTT CTTCGATAATGTTAATCATGGTAAACTTCTGAAACAATTATGGACACTTGGCATTAAAGATAAAAAGCTTATAAAAATAA TTTCTTTAATGTTAAAGGCACAAATTAAAGATGGTAGCATGATTACAAATCCAGTAAAAGGAACTCCCCAAGGCGGTATA ATCTCACCGTTATTAGCAAATGTAGTATTAAATGAGCTTGATTGGTGGATAAGTAGTCAATGGGAAACATTTGAAACAAA ACATAATTACAGTAAACTTAGAACGTTTAAGAATGGCACTACAACAATAGATAAAAGTCATAAATATAGAGCATTAAGAA ATGGTAAATTAAAAGAAATCTATATAGTGCGATATGCTGATGATTTTAAAGTGTTTTGTAAAAATCCCAAAGATGCAGAA AAAATATTCATAGCAATAAAATTATGGTTAAAAGAAAGATTAGATTTAGAAACAAGTCCTGAAAAATCAAAAGTAACCAA TTTAAGAAAACATCCAACAGAATTTTTAGGATTTGAACTTAAAGCAGAAAAGAAACGTAAAAAATATGTATGTCAATCTC ATGTTTCTAAAAAGGCAAAAAGACTAATACAAGAAAAAATTAAAGCTAAAATAAAAGAATTGCAGAAGTGTCCAGCTAAA TCAAATAATGCTAATATGTATAACTCAAGTATTCTTGGTATGCATAATTATTATAAGATAGCAACAAAAGTAAGCAATGA TTTTCATGAAATAGCTTTTAAAGTCTCGAAGAGCCTATATATTAGATTAAAAACAACTAAAACTAAGAGTGGCAATAAAT CTAAAGCTTTTATGAAATATTATGGAGATTATAATTATAAGATAACTTATATAAAAAATATAGCGTTATTTCCAATAGAA GGTATTAAAACCAAAAATGCAATGCAATTTCAACAAGATATAAGTAATTATACAGTTGAAGGTAGAGCTAAAATTCATAA AAATCTTAAAGATGTAGATATGAATATAATGCGATATCTATTGGAAAACCCAATCAAAGGAGAAACACTTCAATATAATG ATAATAGAATCTCCTTATATGTTGGGCAAAAAGGAAAATGTGCTATTACAGGACAGAAGCTTGAAATAGGCAATATGGAA TCACATCATAAAACATCAAGGAAACAAGGTGGAACGGATGCATATGAAAATCTAATTTTTATATTGTCAGATATTCATAA ACTAATTCATGCTACATTACCTGAAATAATACAAAAATATATAAGGAAATTAAATCTAAATAAAGAAGCTTTGGATAAAA TTAATAAACTTAGATTAAAAGTTGGAAATTGTGAATTATAA Protein sequence : MSNEKFKNRKFNKKKQKLRNNEYYDMQSIFDELYKQSKDGKQFKNLIKTITSKENILLAYRNIKKNDGSHTKGTNHKTIN DIAGESEDEIIEYVRKRLNKFYPHSVKRIYIPKNNGDKRPLGIPTIEDRLIQRSILQVLEPICEAKFHPHSYGFRPNRST EHAIARAMTLINMNKLHYVVDVDIKGFFDNVNHGKLLKQLWTLGIKDKKLIKIISLMLKAQIKDGSMITNPVKGTPQGGI ISPLLANVVLNELDWWISSQWETFETKHNYSKLRTFKNGTTTIDKSHKYRALRNGKLKEIYIVRYADDFKVFCKNPKDAE KIFIAIKLWLKERLDLETSPEKSKVTNLRKHPTEFLGFELKAEKKRKKYVCQSHVSKKAKRLIQEKIKAKIKELQKCPAK SNNANMYNSSILGMHNYYKIATKVSNDFHEIAFKVSKSLYIRLKTTKTKSGNKSKAFMKYYGDYNYKITYIKNIALFPIE GIKTKNAMQFQQDISNYTVEGRAKIHKNLKDVDMNIMRYLLENPIKGETLQYNDNRISLYVGQKGKCAITGQKLEIGNME SHHKTSRKQGGTDAYENLIFILSDIHKLIHATLPEIIQKYIRKLNLNKEALDKINKLRLKVGNCEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2326 | NP_815981.1 | group II intron reverse transcriptase maturase | Not tested | Not named | Protein | 3e-130 | 51 |
| ef0012 | AAM75218.1 | EF0012 | Not tested | Not named | Protein | 2e-98 | 43 |
