Gene Information

Name : kdsB (NGR_c35510)
Accession : YP_002828027.1
Strain : Sinorhizobium fredii NGR234
Genome accession: NC_012587
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : -
Position : 3767559 - 3768350 bp
Length : 792 bp
Strand : +
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence :
GTGAGACGTTTTGACACTTTCTGCGGGGTTTTTGAAGGCAAGACGATGAATCGTGAAAATTCAGGCAAAGCCCTCGTGCT
CATTCCGGCGCGCATGGCCTCGACGCGCCTGCCGGGCAAGCCGCTTGCCGACATCTGCGGCCTGCCGATGATCGTCCAGG
TGGCCCGGCGCGCCGCGGAAGCCGACGTCGGCCGAATCGTCGTCGCCGTCGATCATAGCGATGTCTTCGAGGCGGTGCGC
GATGCCGGCTTCGAGGCGATCATGACGCGCATCGATCACCAGTCGGGCTCCGACCGGATCTACGAGGCCCTGCAGAAGGC
CGATCCCAATGGCGAGGCCGAGATCGTCATCAACGTCCAGGGCGACCTGCCGACCATCGAGCCCGGTCCGATCCGCGCCG
CACTGAAGCCGCTCGAAAATGCGGCAACCGACATCGCCACGCTGACGGTGGAAATTACCGACGAGCACGAAAAGACCAAC
CCGAACGTCGTCAAGGTGGTCGGATCGCCGCTGTCGGAGAGCCGGCTGCGCGCCCTCTATTTCACCCGCGCGACGGCGCC
GCATGGCGCCGGGCCGCTCTACCACCATATCGGCCTCTACGCCTACCGGCGCAGGGCACTCGAGACCTTCGTGTCGCTGA
TGCCTTCGACGCTCGAGAAACGCGAATCGCTCGAACAACTTCGGGCGCTCGAAGCCGGCATGCGCATCGATGTCGAGATC
GTCCATTCCGTGCCGCTCGGCGTCGACACGCCGGCCGACCTCGAGAAAGCCCGCCGCATACTCGCGGCTTGA

Protein sequence :
MRRFDTFCGVFEGKTMNRENSGKALVLIPARMASTRLPGKPLADICGLPMIVQVARRAAEADVGRIVVAVDHSDVFEAVR
DAGFEAIMTRIDHQSGSDRIYEALQKADPNGEAEIVINVQGDLPTIEPGPIRAALKPLENAATDIATLTVEITDEHEKTN
PNVVKVVGSPLSESRLRALYFTRATAPHGAGPLYHHIGLYAYRRRALETFVSLMPSTLEKRESLEQLRALEAGMRIDVEI
VHSVPLGVDTPADLEKARRILAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 5e-31 45
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 4e-31 45
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 5e-32 45