Gene Information

Name : NGR_c31050 (NGR_c31050)
Accession : YP_002827593.1
Strain : Sinorhizobium fredii NGR234
Genome accession: NC_012587
Putative virulence/resistance : Virulence
Product : iron transmembrane ABC transporter component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3262138 - 3262989 bp
Length : 852 bp
Strand : +
Note : -

DNA sequence : 
ATGATGTCCCTCGACATGCTCACCGCCGTCTTCGAATTCGAGTTCATGCGCAACGCGCTGCTGATCTCGGTCCTCGTCGC
CATCCCGACCGCCATGCTCTCCTGCTTCCTGGTGCTGAAGGGCTGGTCGCTGATGGGCGACGCGATCTCGCATGCTGTTT
TTCCGGGCGTCGTGATTTCCTACATCGTCGGCCTGCCGCTTGCCCTCGGCGCCTTTACCGCCGGCATGTGCTGCGCGCTC
TTGACCGGCTATCTCAAGGAAAACAGCCGTATCAAGCAGGATACCGTGATGGGCGTCGTCTTCTCCGGCATGTTCGGCCT
GGGCCTTGTGCTCTACACCAAGATCCAGAGCGACGTGCATCTCGACCATATCCTCTTCGGCGACATGCTCGGCATCGGCT
GGGGCGACATCCTGGAGACGGGCCTGATCGCGCTTTTCGCCGCCGGCATTCTTTCCTTCAAGTGGCGCGACCTGCTGCTG
CACGCCTTCGATCCGGCCCAGGCGCGCGCCGTGGGCTTGCCGGTCGGCTGGCTGCATTACGGGCTGCTGGCGATCCTGTC
GCTGACGATCGTCGGCGCATTGAAAGCCGTCGGACTGATCCTCGCCATCGCCATGCTGATCGCCCCCGGCGCCATCGCCT
TTCTGGTGACGCGGACATTTCGCGGCATGCTGATCGTCGCGGTCGCCGTCGCCGTCGCGGCCTCCTTCTCGGGCGTCTAC
CTCTCGTTCTTCATCGACAGCGCCCCCGCCCCGACCATCGTCCTCCTGATGACGGCGATCTTCCTCGTCGCCTTCGCCTG
GTCGACCTGGAGGACGGCGCGGATGGAAGCGCAGCGGACACGCGTGGAGTAG

Protein sequence : 
MMSLDMLTAVFEFEFMRNALLISVLVAIPTAMLSCFLVLKGWSLMGDAISHAVFPGVVISYIVGLPLALGAFTAGMCCAL
LTGYLKENSRIKQDTVMGVVFSGMFGLGLVLYTKIQSDVHLDHILFGDMLGIGWGDILETGLIALFAAGILSFKWRDLLL
HAFDPAQARAVGLPVGWLHYGLLAILSLTIVGALKAVGLILAIAMLIAPGAIAFLVTRTFRGMLIVAVAVAVAASFSGVY
LSFFIDSAPAPTIVLLMTAIFLVAFAWSTWRTARMEAQRTRVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-82 66
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-82 66
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-82 65
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-82 65
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-82 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NGR_c31050 YP_002827593.1 iron transmembrane ABC transporter component BAC0352 Protein 3e-82 66
NGR_c31050 YP_002827593.1 iron transmembrane ABC transporter component BAC0442 Protein 3e-64 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NGR_c31050 YP_002827593.1 iron transmembrane ABC transporter component VFG0528 Protein 2e-82 66