Gene Information

Name : NGR_c31040 (NGR_c31040)
Accession : YP_002827592.1
Strain : Sinorhizobium fredii NGR234
Genome accession: NC_012587
Putative virulence/resistance : Virulence
Product : iron transmembrane ABC transporter component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3261281 - 3262141 bp
Length : 861 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGCCCTGCTCGCAGAACCCTTCACCTATGGCTATATGCTGAACGCCATGTGGGTCAGCGCGCTGGTCGGCGCCGT
CTGCGCCTTCCTGTCGGCCTATCTGATGCTGAAGGGCTGGTCGCTGATCGGCGACGCACTGTCCCATTCGATCGTCCCCG
GCGTCGCCGGCGCCTATATGCTCGGCCTCCCCTTCTCGCTCGGCGCCTTCTTCTCCGGCGGGCTCGCCGCCGGCGCCATG
CTTTTCCTGAACCAGCGGACGCGATTGAAGGAGGATACGATCATCGGCCTGATCTTCACCTCCTTCTTCGGCCTCGGCCT
GTTCATGGTGTCGCTGTCGCCGACGTCGGTGAACATCCAGACGATCGTGCTCGGCAACATCCTCGCCATCACCCCGGCCG
ACACGCTGCAACTCGCCATCATCGGCATCGTCTCGCTGCTGATCCTGTCGGCGAAATGGAAGGACCTGATGGTGACCTTC
TTCGACGAAAGCCATGCCCGCTCGATCGGCATCAATACGACCTTCCTGAAGGTGCTGTTCTTCACGCTGCTTTCGGCCTG
CACGGTGGCGGCGCTGCAGACCGTCGGCGCCTTTCTCGTCATCGCCATGGTCGTCACACCGGGCGCCACCGCCTATCTCA
TCACCGACCGCTTCCCGCGGCTGATTCTGATCAGCATCGCGATCGGAGCGGCGACGAGCTTCCTCGGCGCCTATGCGAGC
TATTTCCTCGACGGCGCCACCGGCGGCATCATCATCGTGCTGCAGACGCTGATCTTCCTGCTCGCCTTCATCTTTGCCCC
GAAGCACGGACTGATCGCCGCCCGCCGCCGCGCGGCCGAGGCATTGGAGGCGGTGCGATGA

Protein sequence : 
MIALLAEPFTYGYMLNAMWVSALVGAVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGAM
LFLNQRTRLKEDTIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPADTLQLAIIGIVSLLILSAKWKDLMVTF
FDESHARSIGINTTFLKVLFFTLLSACTVAALQTVGAFLVIAMVVTPGATAYLITDRFPRLILISIAIGAATSFLGAYAS
YFLDGATGGIIIVLQTLIFLLAFIFAPKHGLIAARRRAAEALEAVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-78 79
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-78 79
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-78 79
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-78 79
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-78 79

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NGR_c31040 YP_002827592.1 iron transmembrane ABC transporter component BAC0351 Protein 1e-78 79
NGR_c31040 YP_002827592.1 iron transmembrane ABC transporter component BAC0441 Protein 4e-70 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NGR_c31040 YP_002827592.1 iron transmembrane ABC transporter component VFG0527 Protein 1e-78 79