Gene Information

Name : NGR_c31020 (NGR_c31020)
Accession : YP_002827590.1
Strain : Sinorhizobium fredii NGR234
Genome accession: NC_012587
Putative virulence/resistance : Virulence
Product : iron transport protein, periplasmic-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3259453 - 3260358 bp
Length : 906 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGATCGGACGCGGCGCATGATTCTGACGGCAGCAACGGCAATGGCTGCCCTTTCCCTCCTGTCCGGCGCGGCGGC
GGCAGCGGAGAAATTCAAGGCGGTCACCACCTTCACGGTCATTGCCGACATGGCGCAAAACGTTGCCGGCGATGCGGCGA
TCGTCGAATCGATCACCAAACCCGGCGCCGAGATCCACAACTACCAGCCGACGCCGCGCGACATCCTGAAGGCGCATGAT
GCCAAGCTGATCCTCTGGAACGGCCTCAACCTCGAGCTCTGGTTCGAGAAGTTCTTCCAGAACTTCGACGACATTCCAGG
CGTCGTCGTCTCCGAAGGCGTCGAGCCGATGGGCATCGCCGAAGGCCCCTATACGGGCAAGCCGAACCCGCATGCCTGGA
TGTCGCCGTCGGCGGCGATGATCTATGTCGACAACATCCGCGACGCCTTCGTGAAGTTCGATCCGGACAATGCCGAGACC
TACAAGGCGAATGCCGAGGCCTACAAGAAGAAGATCGAGGCGACCATCGCGCCGATCAAGGCGGAGCTCGACAAGATCCC
GGCGGAAAAGCGCTGGCTGGTCTCGAGCGAAGGCGCCTTCAGCTATCTCACGCGGGATTTCGGCCTGAAGGAACTCTATC
TCTGGCCGATCAACGCCGACCAGCAGGGCACGCCGCAGCAGGTGCGCAAGGTGATCGACGCGGTGAGAGCCAACCACATT
CCGGTGGTCTTCTCCGAGAGCACCATCTCGCCCGATCCGGCCATGCAGGTGGCGCGCGAGACGGGTGCCAAATACGGCGG
CGTGCTCTATGTGGATTCCCTGAGCGAGGCCGACGGACCGGTCCCGACCTATGCCGATCTGCTGCGTGTCACGTCCGAAA
CGATCGCGAAAGGTCTTTCGCAATGA

Protein sequence : 
MIDRTRRMILTAATAMAALSLLSGAAAAAEKFKAVTTFTVIADMAQNVAGDAAIVESITKPGAEIHNYQPTPRDILKAHD
AKLILWNGLNLELWFEKFFQNFDDIPGVVVSEGVEPMGIAEGPYTGKPNPHAWMSPSAAMIYVDNIRDAFVKFDPDNAET
YKANAEAYKKKIEATIAPIKAELDKIPAEKRWLVSSEGAFSYLTRDFGLKELYLWPINADQQGTPQQVRKVIDAVRANHI
PVVFSESTISPDPAMQVARETGAKYGGVLYVDSLSEADGPVPTYADLLRVTSETIAKGLSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-97 73
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 6e-97 73
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 6e-97 73
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 6e-97 73
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-97 73

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NGR_c31020 YP_002827590.1 iron transport protein, periplasmic-binding protein BAC0349 Protein 3e-97 73
NGR_c31020 YP_002827590.1 iron transport protein, periplasmic-binding protein BAC0439 Protein 5e-93 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NGR_c31020 YP_002827590.1 iron transport protein, periplasmic-binding protein VFG0525 Protein 2e-97 73