|
Name : xerD (NGR_c27250) Accession : YP_002827227.1 Strain : Sinorhizobium fredii NGR234 Genome accession: NC_012587 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 2836751 - 2837692 bp Length : 942 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGACGGATCTTTCGGAAGCCCATCTCGAAGCTTTCCTGGAAATGATGAGCGCCGAGCGCGGTGCGGCGATCAACACGCT GCAATCCTACGAACGCGATCTCAGGGACGCGCTCGCCTTCCTGCGCTCGTCAGGGGCACGGCTCAACAGTGCGACGGCCG ACGATCTGAAACGCTATCTCTCGCACCTGGCCGGCGAGGGCTTCAAATCGTCCTCGCAGGCGCGCCGGCTGTCGGCGCTC CGGCAATTCTACAAGTTCCTCTATGCGGAGGGGCTGCGCGGCGATGACCCGACCGGCATCCTGGATGCGCCCAAGAAGGC GCGTGCCCTGCCCAAAACGCTCAGCATAGACGACGTCACCCGACTGATCGGCCAAGCCGAGGCGGAAGCCGCCGCCGGCG GCGAGGACGCCTTCGCGCGGCTTCGCATGCACGCACTGATCGAGCTTCTCTATGCGACCGGCATGCGCGTCAGCGAGCTC GTCTCGCTGCCTGCGAGCGTGCTTGCGCAGAATGGCCGCTTCCTGGTGATCCGCGGCAAGGGCAACAAGGAACGGCTTGT GCCGCTGTCGCAGGCGGCGATCCGCGCTATGCGGACGTACGGCGACGCGCTGCGCAGGAGAGCGGCGGAAGCGGAGAGCC CCTGGCTGTTCCCCTCCTCCGGCAAATCCGGCCACCTGCCGCGCCAGGTCTTCGCCCGCGACCTCAAGAGTCTCGCCGCG CGCGCCGGTATCAGGGTCGCCGTGATCTCGCCGCACGTGCTGCGCCACGCCTTCGCCAGCCATCTGCTGGCCAATGGCGC CGACCTCCGCGCCGTGCAGGAGCTGCTCGGTCATTCGGACATTTCGACGACACAAATCTATACGCATGTGCTGGAAGAAC GGCTGCACGAGCTGGTGCAAAACCACCACCCCCTTGCCAAACAGGCGAAAAAACAGGATTAG Protein sequence : MTDLSEAHLEAFLEMMSAERGAAINTLQSYERDLRDALAFLRSSGARLNSATADDLKRYLSHLAGEGFKSSSQARRLSAL RQFYKFLYAEGLRGDDPTGILDAPKKARALPKTLSIDDVTRLIGQAEAEAAAGGEDAFARLRMHALIELLYATGMRVSEL VSLPASVLAQNGRFLVIRGKGNKERLVPLSQAAIRAMRTYGDALRRRAAEAESPWLFPSSGKSGHLPRQVFARDLKSLAA RAGIRVAVISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHELVQNHHPLAKQAKKQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 7e-37 | 43 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 7e-37 | 43 |
