|
Name : clpB (NGR_c26540) Accession : YP_002827157.1 Strain : Sinorhizobium fredii NGR234 Genome accession: NC_012587 Putative virulence/resistance : Virulence Product : endopeptidase Clp ATP-binding subunit ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2760750 - 2763356 bp Length : 2607 bp Strand : - Note : - DNA sequence : ATGAATATCGAGAAATATTCCGAGCGCGTCCGCGGCTTCCTTCAATCCGCGCAGACCCATGCGTTGGCCGAAGGGCACCA GCAATTCACGCCGGAGCACGTGCTGAAGGTCTTGCTAGACGACGACCAAGGCATGGCGGCTTCGCTCATCGAGCGCGCCG GCGGTGATGCGCGCGAGGCACGTGCCGGCACGGCCGCGGCGTTGGCGAAGCTTCCGAAGGTGACGGGCGGCAGCGGTTCC GTCTATCTGTCGCAACCGCTTGCCAAGGTCTTCACCGCGGCGGAAGAGGCGGCCAAGAAGGCCGGCGACAGCTTCGTGAC CGTCGAGCGGCTGCTTCTGGCGCTGGCGATCGAGAGCTCGGCCGCGACGGCGACGATTCTCGCGAAGGCGGGCATCACGC CGACGAAACTCAACCAGGTCATCAACGAGATCCGCAAGGGCCGGACCGCCGACAGCGCCAATGCCGAGCAGGGCTTCGAT TCTTTGAAGAAATATGCGCGCGACCTCACCGAGGAAGCGCGGGACGGCAAGCTCGATCCGGTGATCGGCCGCGATGACGA AATCCGCCGCACGATCCAGGTGCTGTCGCGCCGCACCAAGAACAATCCGGTGCTGATCGGCGAACCGGGCGTCGGCAAGA CGGCGATCGCCGAAGGGCTGGCGCTGAGGATCGTCAATGGCGACGTGCCGGAGAGCCTCAAGGACAAGCGCCTGATGGCG CTGGACATGGGCGCGCTGATTGCCGGCGCGAAATACCGCGGCGAGTTCGAAGAGCGGCTGAAGGCGGTGCTCAACGAGGT GCGCGCCGGGGAGGGCGAGATCATCCTCTTCATCGACGAGATGCATACGCTGGTCGGCGCCGGCAAGGCGGATGGGGCGA TGGACGCCTCGAATCTCCTGAAGCCTGCGCTGGCGCGCGGCGAATTGCACTGCGTCGGCGCGACGACGCTCGACGAATAC CGCAAGCATGTCGAGAAGGATGCGGCGCTGGCCCGCCGGTTCCAGCCGGTGATGGTCGAGGAGCCGACGGTCGAGGACAC GATCTCCATCCTGCGCGGTCTCAAGGAAAAATACGAACAGCATCACAAGGTACGGATCTCCGATTCGGCTCTGGTCGCCG CCGCGACCCTATCCAACCGTTACATCACCGACCGTTTCCTGCCCGACAAGGCGATCGACCTCATGGACGAAGCGGCATCG CGGCTCAGGATGCAGGTCGATTCCAAACCGGAGGAGCTCGACGAGCTCGACAGGCGCGTCATCCAGCTGAAGATCGAGCG CGAGGCCTTGAAGAAGGAAACCGATGCCTCCTCGAAGGACCGCCTGGAGAAGCTGGAGCTCGACCTTGCGGCGCTCGAGG AGCAAGCGGCGGCGCTGACGGCCCGCTGGCAGGCGGAGAAGCAGAAGCTTGGGCGAGCTGCCGACCTCAAGAAGCAGCTC GACGAGGCCCGCAACGAGCTTCAGATCGTCCAGCGCAAGGGTGAATTCCAGCGGGCGGGCGAGCTGACCTATGGCGTCAT CCCGACGCTCGAGAAGGAGCTTGCCGAGGCGGAGAGCCAGGATGGATCGAGCGCCAATGCCATGGTGCAGGAGGTGGTCA CACCCGACAACATCGCCCATGTCGTCTCGCGCTGGACCGGCATTCCGGTCGACAAGATGCTCGAAGGCGAGCGCGAAAAG CTGCTGAGAATGGAGGATGAGCTGGCGAAATGGGTCGTCGGCCAGGGCGACGCCGTCCAGGCCGTGTCCCGTGCCGTCCG CCGCGCCCGCGCCGGGCTTCAGGATCCGAACCGGCCGATCGGCTCGTTCATCTTTCTCGGCCCGACGGGCGTCGGCAAGA CGGAGCTTACCAAGGCGCTTGCCCGTTTCCTCTTCGACGACGAGACGGCGCTGATGCGCGTCGACATGTCGGAATACATG GAGAAGCACTCGGTCGCCCGGTTGATCGGCGCACCGCCCGGCTATGTCGGCTATGAGGAGGGCGGCGCGCTCACCGAATC CGTCCGCCGCCGACCCTATCAGGTCGTGCTGTTCGACGAGATCGAAAAGGCGCATCCGGATGTCTTCAACGTGCTGCTGC AGGTGCTCGACGACGGACGCCTGACCGATGGCCAGGGCCGCACCGTCGACTTCAAGAACACGATGATCATCATGACGTCG AATCTCGGTGCGGAATACCTGACCGGGCTCGGCGAGAACGAGGACAGCGACGCTGTCCGCGACCAGGTCATGGAGGTGGT CAGAGCCGCTTTCCGGCCGGAGTTCCTGAACCGGGTCGACGAGATCATCCTGTTCCATCGGCTGCGCCGCTCGGAAATGG GCGCGATCGTCGATATCCAGCTCGAACGACTGCGCAAGCTGCTCGGCGAGCGCAAGATCACGCTGGAACTCGAGGACGAG GCCCGCGCCTTCCTCGCCGACAAGGGGTATGACCCGGCCTACGGCGCGCGGCCCTTGAAGCGGGCGATCCAGAAATATCT CCAGGACCCGTTGGCGGAGAAAATGCTGCAGGGCGAGTTCCCGGACGGATCGGCGATCAAGATCATCGCCGGCTCCGACC GGCTGAATTTCAAGCGCGGCACGCCGGCTGCAAAGGAAGCCGCGTAG Protein sequence : MNIEKYSERVRGFLQSAQTHALAEGHQQFTPEHVLKVLLDDDQGMAASLIERAGGDAREARAGTAAALAKLPKVTGGSGS VYLSQPLAKVFTAAEEAAKKAGDSFVTVERLLLALAIESSAATATILAKAGITPTKLNQVINEIRKGRTADSANAEQGFD SLKKYARDLTEEARDGKLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKRLMA LDMGALIAGAKYRGEFEERLKAVLNEVRAGEGEIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEY RKHVEKDAALARRFQPVMVEEPTVEDTISILRGLKEKYEQHHKVRISDSALVAAATLSNRYITDRFLPDKAIDLMDEAAS RLRMQVDSKPEELDELDRRVIQLKIEREALKKETDASSKDRLEKLELDLAALEEQAAALTARWQAEKQKLGRAADLKKQL DEARNELQIVQRKGEFQRAGELTYGVIPTLEKELAEAESQDGSSANAMVQEVVTPDNIAHVVSRWTGIPVDKMLEGEREK LLRMEDELAKWVVGQGDAVQAVSRAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETALMRVDMSEYM EKHSVARLIGAPPGYVGYEEGGALTESVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTMIIMTS NLGAEYLTGLGENEDSDAVRDQVMEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLGERKITLELEDE ARAFLADKGYDPAYGARPLKRAIQKYLQDPLAEKMLQGEFPDGSAIKIIAGSDRLNFKRGTPAAKEAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-102 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002827157.1 | endopeptidase Clp ATP-binding subunit ClpB | VFG2084 | Protein | 7e-105 | 42 |
