Gene Information

Name : NGR_c24480 (NGR_c24480)
Accession : YP_002826958.1
Strain : Sinorhizobium fredii NGR234
Genome accession: NC_012587
Putative virulence/resistance : Virulence
Product : quaternary ammonium compound-resistance protein QacE
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 2547065 - 2547394 bp
Length : 330 bp
Strand : -
Note : quarternaryammonium determinant E

DNA sequence : 
ATGCTCTACACCGTTCTGGTGATCGCCATCGTCTTCGAAGTGCTCGGCACCTCGGCCATGCAGGCGGCGCAGCATTTTAC
GCGGCTCGCGCCGACCGTGCTGATGGTGGTCTGCTATGCCGTCGCCTTCTTCTTCCTGTCCTATACGCTGCGCTACATTC
CCGTAGGCATCGCCTATGCGCTGTGGAGCGGCCTCGGCATCGTGCTGATTTCAGGGGTGGGCTACATCACGTTCGGCCAG
AAGCTCGACCTCGCGGCGATTCTCGGCCTGGCGCTGATCATCGCCGGCGTCCTGGTTCTCAATCTCTTCTCGAAGTCCAC
CTTCCATTGA

Protein sequence : 
MLYTVLVIAIVFEVLGTSAMQAAQHFTRLAPTVLMVVCYAVAFFFLSYTLRYIPVGIAYALWSGLGIVLISGVGYITFGQ
KLDLAAILGLALIIAGVLVLNLFSKSTFH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 8e-09 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE NC_010410.6003348.p0 Protein 7e-15 58
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE BAC0002 Protein 7e-15 58
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE BAC0150 Protein 3e-14 56
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE NC_002695.1.913273.p Protein 3e-14 56
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE BAC0324 Protein 1e-16 54
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE BAC0322 Protein 5e-18 54
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE CP004022.1.gene1549. Protein 1e-12 52
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE BAC0377 Protein 8e-14 52
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE CP001138.1.gene1489. Protein 1e-14 52
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE BAC0327 Protein 9e-13 41
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE BAC0329 Protein 1e-11 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NGR_c24480 YP_002826958.1 quaternary ammonium compound-resistance protein QacE VFG1586 Protein 3e-09 42