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Name : NGR_c15790 (NGR_c15790) Accession : YP_002826098.1 Strain : Sinorhizobium fredii NGR234 Genome accession: NC_012587 Putative virulence/resistance : Resistance Product : tetracycline repressor protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 1630075 - 1631370 bp Length : 1296 bp Strand : + Note : - DNA sequence : ATGCTCGACAGGAAATTCGTGCGACGCGGCCTGTTCCTCGTCTTCTTGATCCTGCTTCTCGACATCATGGGCATTGCCAT CATCGTCCCCGTGCTGCCCAGCTACCTTCAGGAACTGACCGGGGCGAATGTCGGCGAGGCGGCTATCGAGGGCGGCTGGC TGCTGCTCGTCTATTCGGGCATGCAGTTTCTATTTGCGCCGGTGATCGGCAATTTGAGCGACCGGTTCGGACGGCGGCCG ATCCTGCTGGCCTCGGTCTTGACGTTCGCGATCGACAACCTGATCTGCGCGCTGGCGACGAGCTATTGGATGCTGTTTGT CGGCCGCATTCTCGCCGGCATCAGCGGCGCCAGCTTTGGCACTGCCTCCGCCTTCATCGCCGACGTCAGCGACGATACAA ACCGTGCCAGGAACTTCGGGTTGATCGGCATCGCTTTCGGCACCGGCTTCGCGCTCGGTCCTGTGATCGGCGGCCTTCTT GGCGAGTTGGGTCCACGCGTCCCATTTTACGGCGCGGCCGCGCTCTCCTTCGCCAACTTCGCGATCGGCCTGTTCCTTCT CCCCGAGACGCTTCAACCGGCAAATCGGCGCCGCTTCGAGTGGCATCGGGCAAACCCGCTCGGCGCGCTGAAGCAGATGC GCAACTATCCCGGAATCGGCTGGGTGGGTCTCGTCTTCTTCCTCTACTGGCTCGCCCATGCCGTCTATCCGGCGGTCTGG TCCTTCGTTTCGTCCTATCGCTACGGCTGGAGCGAGGGGCAGATCGGATTGTCACTCGGCATTTTCGGCGTTGGCGGAGC GCTGGTGATGGCGGTCGTCCTGCCGCGTGTCGTGTCGAAATTCGGTGAGCGAAGGACGGCGACGCTCGGTCTCGTCTTTA CGGCGCTTGGCATGGCCGGCTACGCGGCTGCCTGGCAGGGCTGGATGGTTTATGTCGTGATCGTCGCGACGGCGCTCGAA AGTCTCGCCGATCCGCCATTGCGCAGCATCGCGTCGGTCCACGTGCCGCCCTCGGCGCAAGGCGAACTGCAGGGAGCTCT TACCAGCATTTCGAGTATAACGACGATCCTCGGGCCGCTTCTGTTCACGCAGATTTTCGCCCTCTTCACGAGCCTGGCAG CCGGTTACGCGTTCTCCGGCGCGCCTTACGCGGTGGCGGCGTGCCTGATCGTCGCAAGCCTGTCCGTATTCCTGCTGCGA GTGCGGCACGTCGGCGCATTTCAGGTCACCGAGCCGACTTCGGTGAACGGTCCTCGGGAACAGTTTGCGCCACGATCGCA AGCGCCGGCGGATTGA Protein sequence : MLDRKFVRRGLFLVFLILLLDIMGIAIIVPVLPSYLQELTGANVGEAAIEGGWLLLVYSGMQFLFAPVIGNLSDRFGRRP ILLASVLTFAIDNLICALATSYWMLFVGRILAGISGASFGTASAFIADVSDDTNRARNFGLIGIAFGTGFALGPVIGGLL GELGPRVPFYGAAALSFANFAIGLFLLPETLQPANRRRFEWHRANPLGALKQMRNYPGIGWVGLVFFLYWLAHAVYPAVW SFVSSYRYGWSEGQIGLSLGIFGVGGALVMAVVLPRVVSKFGERRTATLGLVFTALGMAGYAAAWQGWMVYVVIVATALE SLADPPLRSIASVHVPPSAQGELQGALTSISSITTILGPLLFTQIFALFTSLAAGYAFSGAPYAVAACLIVASLSVFLLR VRHVGAFQVTEPTSVNGPREQFAPRSQAPAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 7e-48 | 41 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 5e-48 | 41 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 5e-48 | 41 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 5e-48 | 41 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 3e-48 | 41 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 2e-48 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NGR_c15790 | YP_002826098.1 | tetracycline repressor protein | NC_011586.7045189.p0 | Protein | 5e-46 | 41 |
| NGR_c15790 | YP_002826098.1 | tetracycline repressor protein | X75761.gene.p01 | Protein | 1e-47 | 41 |
| NGR_c15790 | YP_002826098.1 | tetracycline repressor protein | CP001485.1.gene2821. | Protein | 2e-48 | 41 |
| NGR_c15790 | YP_002826098.1 | tetracycline repressor protein | AF534183.gene.p01 | Protein | 2e-48 | 41 |
| NGR_c15790 | YP_002826098.1 | tetracycline repressor protein | NC_010410.6002597.p0 | Protein | 2e-48 | 41 |
