Gene Information

Name : BAMEG_A0034 (BAMEG_A0034)
Accession : YP_002811470.1
Strain :
Genome accession: NC_012579
Putative virulence/resistance : Unknown
Product : group II intron reverse transcriptase/maturase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3344
EC number : -
Position : 31435 - 33366 bp
Length : 1932 bp
Strand : -
Note : identified by match to protein family HMM PF00078; match to protein family HMM PF01844

DNA sequence :
ATGAATGGCAATTCTAAGTCCGCGCCAAAGGGGAAGAAACTAAGACACAACGAATACTACGGTATTCAACCTGTCCTAGA
TAACTTATACCAAAAAGCAACAAAGGGAAATTCTTTCAAAAACCTAATGTCTATCATTATATCAGACGAAAATATACTTC
TCGCCTACCGCAATATTAAGGGGAACAAAGGAAGTAGAACTGCAGCTTGTGATAATGTAAATATAAAGAATATTGAGGGA
ATGGAACAAAGCTATTTCTTGAATGAAGTTAAAAGACGCTTTCAAAACTACCAACCGCAGAAAGTAAGACGTAAAGAAAT
TTCGAAGCCCAACGGACAAACCAGACCCCTGGGAATACCGGCTATGTGGGATAGGATAATCCAACAGTGCATCTTACAAG
TCATGGAGCCAATCTGCGAAGCGCACTTCAGTAACCGAAGTTATGGTTTTCGCCCAAACAGAAGTGCTGAACATGCCCTA
GCAGATGCATCAGTGCGAGTAAATAAACAAAACCTTACATATGTAGTAGACGTAGACATTAAAGGGTTTTTTGACGAGGT
AAATCACGTCAAGCTCATGCGTCAATTATGGACATTGGGTATCCGTGACAAACAACTTCTGGTCATTATCCGAAAAATAC
TGAAAGCCCCAGTGCAAATGCCTGACGGCACAACAATGTTCCCGACTAAGGGCACCCCACAAGGCGGTATTCTTAGTCCT
ATACTTGCCAACGTCAATCTTAATGAATTCGACTGGTGGATAAGTAGACAATGGGAGACATTCAAAGCTAAAAAGGTAAA
ACCGAGATGCATGAGGGGAATTTGGTGCAATGACGTTGTAACGACACAACTCACCAAAACTTCCAAGATGAAACCAATGT
ACATCGTAAGGTACGCAGATGACTTTAAAATCTTCACAAACACACGTAGTAATGCGGAGAAAATTTTCAAAGCGACTCAA
ATGTGGTTAGAAGAACGTCTAAAACTGTCTATCTCAGCCGAAAAGTCTAAAGTAACCAATCTGACAAAGCAACAAAGTGA
ATTCTTAGGTTTCACCCTCAAAGCTGTAAAGAAAGGTAAAAAGAAGAACGGCGACACACGATACATTGCAGTAACACACG
TTTCCCCAAAAGCACTGGAAAAAACAAAACAAGATTTAGCAAAACAAGTGAGAAGAATACAGAAAACCCCAAACTCTAAT
GAAACAATTAAGAGAATCAGCATATACAACAGCATGGTCATTGGTAAGCACAACTATTATAAAATAGCTACGCATGCCTC
CCAGGATTTCAGTAAAATGAACCATAATCTTGACCACATAATGTATAACAGATTCCCTAAGTCAACAACTGGAGGTAAAA
GCAACACAAATGGATACACGAATATAGGAGAATATAAAGGAAAAGACAAAGGTATTAAACCATATCTAAAGTCAAAAATG
ACGAGATTTCTCATGAAACGTCCCATCCTACCAATCTCCTATATTCAACACAAAAACCCGATGATGAAAAAGCAAGCCAT
TAACAAGTACACCGCAGAAGGACGAGCCCTGATACATAAAAACTTGGCAGACATAACCGAAGCGGAACTGAAATGGTTAA
GAGAAAATCCAGTTATAAATGAACGGGCAACCGTAGAATACAATGACAACCGAATTTCTCTTTATGTCGCACAAAAAGGC
AAATGCAGTGTAACAGGTGAGAAACTCTTACCTTGGGACATTCATTGTCACCATAAGCGATTATGGAGTGAAACAAAGGA
CGACAGCTACAAGAATCTTACCATCATCAAACCAAGTGTCCATAGACTAATACACGCAACCAAGATAGAAACCATAAACC
AACTACTCAATGAACTCAAATTCAATGAGGAACAGTTAGGCAAACTCAATAAATTGCGAAAATTAGTCAAAAACGAGGAA
ATCTGTATTTAA

Protein sequence :
MNGNSKSAPKGKKLRHNEYYGIQPVLDNLYQKATKGNSFKNLMSIIISDENILLAYRNIKGNKGSRTAACDNVNIKNIEG
MEQSYFLNEVKRRFQNYQPQKVRRKEISKPNGQTRPLGIPAMWDRIIQQCILQVMEPICEAHFSNRSYGFRPNRSAEHAL
ADASVRVNKQNLTYVVDVDIKGFFDEVNHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQMPDGTTMFPTKGTPQGGILSP
ILANVNLNEFDWWISRQWETFKAKKVKPRCMRGIWCNDVVTTQLTKTSKMKPMYIVRYADDFKIFTNTRSNAEKIFKATQ
MWLEERLKLSISAEKSKVTNLTKQQSEFLGFTLKAVKKGKKKNGDTRYIAVTHVSPKALEKTKQDLAKQVRRIQKTPNSN
ETIKRISIYNSMVIGKHNYYKIATHASQDFSKMNHNLDHIMYNRFPKSTTGGKSNTNGYTNIGEYKGKDKGIKPYLKSKM
TRFLMKRPILPISYIQHKNPMMKKQAINKYTAEGRALIHKNLADITEAELKWLRENPVINERATVEYNDNRISLYVAQKG
KCSVTGEKLLPWDIHCHHKRLWSETKDDSYKNLTIIKPSVHRLIHATKIETINQLLNELKFNEEQLGKLNKLRKLVKNEE
ICI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0012 AAM75218.1 EF0012 Not tested Not named Protein 2e-132 48
EF2326 NP_815981.1 group II intron reverse transcriptase maturase Not tested Not named Protein 4e-134 47