Gene Information

Name : VCM66_0804 (VCM66_0804)
Accession : YP_002809574.1
Strain :
Genome accession: NC_012578
Putative virulence/resistance : Unknown
Product : integrase, phage family
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 870308 - 871576 bp
Length : 1269 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAAAAAACACAGTAAAGCTGACAGATAAAGAGATCAAAGCCTCCAAACCTAGAGAGAAAGAATATAATCTTTTCGA
TGGTGATGGCTTGCGACTTAGAATCAAACCTAACGGTTCAAAGCAGTGGATCTTCAACTACTATCGCCCCACAAACGGTA
AACGAGCTAACTTAAGCTTTGGAATGTACCCAGACATCTCCCTTTTACAAGCAAGAAAAAGCTTACTTTCTGCCAAAGAG
CTGATCGCACAAGGCATCGATCCACAAGACGATCGAAAACGCCAACAACAAGTACATAAAGAGATCCATGAGCACACCTT
TGAGAACGTCACAAAGGATTGGTTTGCCATCAAACAGAATGATGTGACACCGGATTACGCCCTTGATATCTGGCGTTCAT
TAGAGCTACATATCTTCCCGCACATTTCCGACAAACCGGTAAAAGCGATCACCGCTCCGGAGATCATAGAACTACTCAAA
CCGATTGAAGCCAAAGGTAGCCTAGAAACCGTCAAACGTTTAACACAGCGACTCAATGAAGTGATGAACTTCGCCACTAA
CTGCGGTCTTATCCAGGCCAATCCATTAACTGGCATCAAAGCCGCCTTCAAGAAACCAAAAAAAGAAAACATGGCAGCAC
TGACACCAGCAGAACTGCCCGAACTCATGAGCGCAATCGCTAATGCCAGTATCAAACGCACTACCCGTTGTTTACTTGAG
TGGCAACTACACACCATGACGCGCCCAGCGGAAGCATCTGGTGCACGTTGGGATGAAATTAATTGGGAAGAAAAGGTTTG
GACCATTCCTGCTGAAAGAATGAAAAAAAGAAGAGAACACCGCATCCCGCTCACAGAGCAGATGCTGGCGCTATTGGAAG
TAATGAAACCGATAAGTGGCCATCGTGATTTTATTTTTCCGTCGGATAGAGCCCCGAAAAAGCCCTGCAACAGCCAAACG
GCAAATATGGCATTGAAACGTATGGGGTTTGCTGGAAGGCTGGTTAGTCACGGTTTGCGCTCTCTAGCGAGTACCACACT
CAACGAACAAGGCTTTGATCCAGACTTGGTTGAGTCGGCATTGGCTCACGTGGACGATAACCAAGTACGCAGTGCCTATA
ACCGCACTGACTACTTAGAACGCAGAAAACCAATGATGTGCTGGTGGAGCGAGCATATAGAAGAGGCAGCCAGAGGTAGC
CTATCTGTGACTGGTACAAAGCAATTGAAAAATAAACTTCCACCGCCCCCCACATGGAAGCAGATGTGA

Protein sequence : 
MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQARKSLLSAKE
LIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLK
PIEAKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE
WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFPSDRAPKKPCNSQT
ANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGS
LSVTGTKQLKNKLPPPPTWKQM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 0.0 100
int AAK20803.1 integrase Not tested VPI Protein 0.0 100
unnamed AAA82714.1 integrase Not tested VPI Protein 0.0 100
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 0.0 100
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 0.0 100
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 5e-111 54
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 2e-105 54
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 2e-105 54
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-105 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCM66_0804 YP_002809574.1 integrase, phage family VFG1092 Protein 7e-106 54