Gene Information

Name : tcpC (VCM66_0788)
Accession : YP_002809559.1
Strain :
Genome accession: NC_012578
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis outer membrane protein C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 850402 - 851871 bp
Length : 1470 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAAAACAATAATCAGTACACTTGTTATCGGTTTGGTTTCCGGTTGTTCTAATACGAACTTGCTAAAAGACAATCT
GGCTAGCGAGCAAAGTGTTATCAATTTGAGTAAGTCTTCAAACGAAGCGAAATCTAGAAATATTGAATTTCTCTCTGGTG
CCTATTTAAGTGAGAGAAAAGTGCCAAAGCATGACATTAAGTTCAGTGGTAAGTATGTTGAGTTTGAAAGTAAATCACCG
ATAGAGTTAATCGATGTTCTTGATGGACTTTCTAAGCAATATAATATTCAGTATGTATTCTCAGATGAGTTAGAAGATGA
AAATTCAGAAGAAAATAAAAAGTCATCAGGCTCATCATCGGCGAAGAAAATAAAATACTCAGGTCCTCTGGCTGGTTTTT
TTGATTATTTAAGTAGTGCATATAACATGCACTTTGAATTTGGTCATAATAACTTAGTTAAGGCATATCATTATAAAAAT
CAAGTTTTTAACCTCCAGCAATACTTTGATGATAATAAGTTTAGCTCATCAATGCAGATCGGCGGTACCAGTGGCACATC
AAGTGGTTTAAAAGGTACTGCAGATACGGCTATAGAATCTAATAGTTGGGAAAAAATCGATGAGTTTTTAAGTGCATCGT
TAGGTGAAACTGGAAAATTTACTATTTTTGAAGATTATTCACTAGTTACAGTAAAAGCTCGACCAGATAAGTTTTTATTG
TTACATACTTTCTTTGATAAGTTAATCAATGAGAGCAAGATGCAAATCGCGGTTGATTATAGAGTGGTATCTCTTAGTGA
AGAACGCTTAAATCAGTTAGCTGCCAAATTTGGTATTGAAAATGCAGGGAAATACAGTATTACCAGTGATATGGTCGATG
CGATCTCTTTAAGTCAAGTAGGGGGGGGGTTAGGCGCTTCATATCGCTCCGCCTCAGCAAGATTAGATGCAGTGGTTAAT
GAGTTATCACAGGAAGTAATGCATGAGGGGCATTTTATCGGTATCCCTAACAGAGTAATGCCACTAAATGTCACTACAAA
CTCGAAGTATATATCCTCAATCGAAACAACAAAAGATACCAATACTGATGAGGAAACGAGAACTGTCAAAGTTTCTGACT
TAGTAACTGGTTTTAGCATGATGGTTATGCCGAAAATCTTAGATGATGGACGAATTCAAATATCGTCTGGCTTTTCAAGA
AAACAGTTAGTGTCTATTGGTACTGCACAAGGTATTACTCTACCAACAGTTGATGAAAATGAATCAATGAATACAGTAAC
GATGAACCCTGGTGAAGTACGCCTAGCAATGCTATTTAAGGATAACTACATTCAGAATAGTAATGGTGTTCAATTATTAG
GTGGTGGTACTGAAAATAAGAAATCGGCTCGTTATATTGCTGTGCTTGTTGGTGCAAGCAGTTACAAAACCAATGATCTG
GCTAGTAATAGAGTAAATATATATGACTAG

Protein sequence : 
MKKTIISTLVIGLVSGCSNTNLLKDNLASEQSVINLSKSSNEAKSRNIEFLSGAYLSERKVPKHDIKFSGKYVEFESKSP
IELIDVLDGLSKQYNIQYVFSDELEDENSEENKKSSGSSSAKKIKYSGPLAGFFDYLSSAYNMHFEFGHNNLVKAYHYKN
QVFNLQQYFDDNKFSSSMQIGGTSGTSSGLKGTADTAIESNSWEKIDEFLSASLGETGKFTIFEDYSLVTVKARPDKFLL
LHTFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAISLSQVGGGLGASYRSASARLDAVVN
ELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSR
KQLVSIGTAQGITLPTVDENESMNTVTMNPGEVRLAMLFKDNYIQNSNGVQLLGGGTENKKSARYIAVLVGASSYKTNDL
ASNRVNIYD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0831 NP_230479.1 toxin co-regulated pilus biosynthesis outer membrane protein C Virulence VPI-1 Protein 0.0 100
tcpC AAK20788.1 toxin-coregulated pilus biosynthesis outer membrane protein C (lipoprotein) Virulence VPI Protein 0.0 100
tcpC YP_001216312.1 toxin co-regulated pilus biosynthesis outer membrane protein C Virulence VPI-1 Protein 0.0 99
tcpC (lipoprotein) CAA45458.1 - Virulence VPI Protein 0.0 99
tcpC AAK20758.1 toxin-coregulated pilus biosynthesis outer membrane protein C (lipoprotein) Virulence VPI Protein 0.0 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tcpC YP_002809559.1 toxin co-regulated pilus biosynthesis outer membrane protein C VFG0094 Protein 0.0 100