Gene Information

Name : CLM_0560 (CLM_0560)
Accession : YP_002802804.1
Strain : Clostridium botulinum Kyoto
Genome accession: NC_012563
Putative virulence/resistance : Resistance
Product : putative cadmium resistance transcriptional regulator CadC
Function : -
COG functional category : K : Transcription
COG ID : COG0640
EC number : -
Position : 606140 - 606505 bp
Length : 366 bp
Strand : +
Note : identified by match to protein family HMM PF01022

DNA sequence : 
ATGGATAAAGAAAAACAGATAGATACTTGTACATGCAATGTAATTCATCATGATGTAGTAGATAAAGTTAAAGATAATAT
GATAGAAGAAGATAAAGCACAAGACTTAGGAGATTTTTTTAAGGTTCTATCAGAACCGACTAGAATAAAAATTTTATATG
CATTATCATCATCAGAAATGTGTGTATGTGATATTTCAAATCTTCTTAATATGACACAATCAGCCGTGTCTCATCAACTT
AAAGTTTTAAGAACAGCTAGACTTATAAAATTTAGAAAAGAGGGTAAAGTTGTTTATTACTCATTAGATGACTCACATGT
AGAGAATGTGTTTAAGCAAGGACTAGAACACATAATGCATAGATAA

Protein sequence : 
MDKEKQIDTCTCNVIHHDVVDKVKDNMIEEDKAQDLGDFFKVLSEPTRIKILYALSSSEMCVCDISNLLNMTQSAVSHQL
KVLRTARLIKFRKEGKVVYYSLDDSHVENVFKQGLEHIMHR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAB47608.1 cadmium resistance protein C Not tested Type-III SCCmec Protein 7e-17 42
cadC BAC57488.1 Cadmium efflux system accessory protein homolog, cadmium resistance protein C Not tested Type-IIIinv SCCmec Protein 7e-17 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLM_0560 YP_002802804.1 putative cadmium resistance transcriptional regulator CadC BAC0366 Protein 1e-17 43