Gene Information

Name : CLM_3051 (CLM_3051)
Accession : YP_002805189.1
Strain : Clostridium botulinum Kyoto
Genome accession: NC_012563
Putative virulence/resistance : Virulence
Product : capsular exopolysaccharide family protein
Function : -
COG functional category : D : Cell cycle control, cell division, chromosome partitioning
COG ID : COG0489
EC number : -
Position : 3050281 - 3050991 bp
Length : 711 bp
Strand : -
Note : identified by match to protein family HMM TIGR01007

DNA sequence : 
TTGGATAGAAACTTAAACCTTATAACTATAAAAGAACCTAAGTCCCCAATATCCGAAGCTTATAGGACATTAAGAACTAA
TATACAATTTTCATCCTTTGATGAAAAAATAAGTGTAATTTTTGTGACTAGTTCTACTCCAGGAGAGGGTAAATCTACAA
CTTCAGCGAATTTAGCCATAACTATGGCACAAAATGGTTCAGAAACTATTTTAGTAGATTGTGATCTTAGAAAACCTAAT
GTACATAAGTTATTTAAGCTATCTAATACAAGGGGATTATCTAATTTACTGATAGAAGACAATGGTATGGATAAGGTAAT
ACAACAAAGCGGTATAGAAAATCTACATATTTTAACTTCAGGAATAAAGCCACCTAATCCCTCAGAGTTATTATCTTCTA
AAAAAATGAAAAAATTTATAGAGATGAGTAAAGAACATTATGATTATATAATATTAGATACCCCACCTGTAGGAGTGGTT
ACAGATGCTCAATTGGTATCCCAGTATTCAGATGGAGGGATATTAGTTACAGCTTCTGGACAGGTTGAAAGAGAATTAGC
TATAAGAGCAAAACAACTTTTACAAAAAGTCAATGCAAAAATACTAGGAGTAGTATTAAATAAGGTAGATACAAGCTCTG
GGAATGGATACAGATATTACAATTATTATTATGAAGAAGATGGAAAAAAGAAAAAAAGAAGCAAAAAATAA

Protein sequence : 
MDRNLNLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGMDKVIQQSGIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 1e-37 44
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 7e-35 44
cpsFD YP_006310771.1 putative autophosphorylating protein tyrosine kinase Not tested FWisland_4 Protein 2e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLM_3051 YP_002805189.1 capsular exopolysaccharide family protein VFG1298 Protein 5e-36 44
CLM_3051 YP_002805189.1 capsular exopolysaccharide family protein VFG1368 Protein 1e-28 44
CLM_3051 YP_002805189.1 capsular exopolysaccharide family protein VFG1349 Protein 9e-32 41