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Name : CLM_2126 (CLM_2126) Accession : YP_002804298.1 Strain : Clostridium botulinum Kyoto Genome accession: NC_012563 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2175493 - 2177022 bp Length : 1530 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : ATGAGCTTTTCTATGAATTATTTAGATTTAAAGGAAACTGTACAAAACTCTGAAGAATTAAAAGGTGGAAAGCAGTGTGA AAATATAGACTTTAGTACTTTAAAAATAGAATCTTCTCTGCTAAAATTGCTGCCAGAGCATATTTGCAGGAAATATAATA TATTACCCTTAAAAATAATTGGCGAACAATTGTATATAGCATCTTCAAATTACTTAAAAGAAGATGCTTTATATAAAATA TCCTTTATTACGGGTAAAAATATAAAAATAGTTCTTTGTAATAAAGAAGATATTTTAGGGGCTATAAAGAGATTTTATAC AAACTATGAAGGAAAATATAATGTTAAAGGAATAAAGGAAGAAAAAACTATATCCTATGAAGAAAATAAAGAAAAAAATT TAGAAGGCCCTATAATAAAGTTAACAGATTCTATAATAGAAGAGGCTGTTTGGAGAAAGGCTAGTGATATACATATAGAA CCATTCAAAGATTTTGCTTTAATAAGATTTAGAATAGATGGCATTTTAATAGAATTCAAAAAAATATCCAAAAAAATTTA CACTTCTATTTGCACTCGTATAAAAATAATGAGTTATATGAACATAGCAGAAAAAAATATTCCCCAGGATGGTAAAATAC AAAACAATTATAGAGAAAATAATGACTTTAGAGTATCTACATTGCCCACAGTATACGGTGAAAAATTAGTGATAAGAATA CTATATAAAAATGAAAAAATAGCAGATTTAAAATCTTTAGGATTTTTAAAAGAAGATAGAAAAAATATAGAAAAAATGCT TAAAAAGCCTAATGGATTAATTTTGATTAGTGGTCCGACGGGAAGTGGTAAATCTACAACTTTATATTCTATGCTTCAAT ATATAAACAATAAAGAAAAAAACATAATAACCATTGAAGAGCCAGTAGAATATACTATAGATGGTATAAACCAAGTTAAT GTAGATTATAAAAGGGAACTTACTTTTCTAAAAGGTTTAAAATCAATACTTAGACAGGACCCGGATATAATAATGGTAGG AGAAATTAGAGATGAAGAAACAGCTAAAGTAGCGGTAAGAGCTTCTATAACAGGACATTTAGTTTTATCTACTCTACATA CTAATGGAGCCTTAGAATCTATAATAAGGCTTTTGGATATGAAAATAGAACCCTATATTCTAAGTGATGCCTTAAGAGGA ATTATTTCACAAAGATTGGTGAGAAAGATATGTCCTTATTGCAAAGAAGCATATATACCTTCAACGGAGGAAAAGAAGTT TCTAAATTTAAAAGAAGAGTTTCTATTATATAAAGGCAAAGGATGTCATAAATGCAATAATACAGGTTATATAGGTAGAA TCGTTCTTTATGAATATATAAATATTGATAAAGAAAAAAAGGACTTAATTAAAAACATAGTAAAAAACAATAATGAAGAA ATTTTTTTAGAAAATAGCTTAAAAGAAAATGTTAATAAAGCATTAATACAAGGAAGGACATCCTTTAGTGAAATCCAAAG AATAATATAA Protein sequence : MSFSMNYLDLKETVQNSEELKGGKQCENIDFSTLKIESSLLKLLPEHICRKYNILPLKIIGEQLYIASSNYLKEDALYKI SFITGKNIKIVLCNKEDILGAIKRFYTNYEGKYNVKGIKEEKTISYEENKEKNLEGPIIKLTDSIIEEAVWRKASDIHIE PFKDFALIRFRIDGILIEFKKISKKIYTSICTRIKIMSYMNIAEKNIPQDGKIQNNYRENNDFRVSTLPTVYGEKLVIRI LYKNEKIADLKSLGFLKEDRKNIEKMLKKPNGLILISGPTGSGKSTTLYSMLQYINNKEKNIITIEEPVEYTIDGINQVN VDYKRELTFLKGLKSILRQDPDIIMVGEIRDEETAKVAVRASITGHLVLSTLHTNGALESIIRLLDMKIEPYILSDALRG IISQRLVRKICPYCKEAYIPSTEEKKFLNLKEEFLLYKGKGCHKCNNTGYIGRIVLYEYINIDKEKKDLIKNIVKNNNEE IFLENSLKENVNKALIQGRTSFSEIQRII |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-69 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-69 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CLM_2126 | YP_002804298.1 | general secretion pathway protein E | VFG1876 | Protein | 7e-70 | 45 |
| CLM_2126 | YP_002804298.1 | general secretion pathway protein E | VFG2048 | Protein | 3e-70 | 44 |
