Gene Information

Name : CLM_1380 (CLM_1380)
Accession : YP_002803582.1
Strain : Clostridium botulinum Kyoto
Genome accession: NC_012563
Putative virulence/resistance : Resistance
Product : putative oligopeptide ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1441113 - 1441787 bp
Length : 675 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
TTGAGCATAATTAAAGCTACTGATGTAAAAAAAACTTTCACTATAGGTAAAATGAATGTAGACATACTTAAGGGGGTTTC
TGTAGAAATTGAAAAGGGTGAATTTGTTGCTATTATTGGTGAGTCTGGTTCTGGTAAATCTACCTTTCTAAATATATTAG
GTGGTTTAATGCCTCCTTCCTCTGGCGATATTTTTATAGAAAATGAAAAAATCAATGGTCTTTCTGAAAATAATTTAGCT
TTATTTAGAAGACATAATATAGGCTTTGTTTTTCAGTCCTATAATTTAATCCCTCAACTTACAGCTTTAGAAAATGTGGA
AATGCCTCTTATTTTTTCAGGGATTTCTAAAAAAGAACGAAAAAATAGAGCCTTTGAAATGCTTAAAAAAGTTGGACTTG
AAGAAAGAGCTCATCATAAGCCTTCTGAACTATCCGGTGGACAACAGCAAAGGGTTTCCATTGCTAGAGCTCTAGTAAAC
TATCCTAAAATAGTGCTTGCTGATGAACCTACTGGAAATCTAGATAGCAAAAATGGTACAGAAATTCTAAATATATTAAA
AGAATTAAACGAAACCACTGGACAAACCTTTGTAATTGTTACTCACTCTTCTCAAGTTTGTGATTATGCAAATAAAATAA
TAAAAGTGGTAGACGGAAAGATATTCAATAACTAA

Protein sequence : 
MSIIKATDVKKTFTIGKMNVDILKGVSVEIEKGEFVAIIGESGSGKSTFLNILGGLMPPSSGDIFIENEKINGLSENNLA
LFRRHNIGFVFQSYNLIPQLTALENVEMPLIFSGISKKERKNRAFEMLKKVGLEERAHHKPSELSGGQQQRVSIARALVN
YPKIVLADEPTGNLDSKNGTEILNILKELNETTGQTFVIVTHSSQVCDYANKIIKVVDGKIFNN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-37 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-38 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-38 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-38 44
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-27 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLM_1380 YP_002803582.1 putative oligopeptide ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-51 51
CLM_1380 YP_002803582.1 putative oligopeptide ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-46 48
CLM_1380 YP_002803582.1 putative oligopeptide ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-42 47
CLM_1380 YP_002803582.1 putative oligopeptide ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-48 45
CLM_1380 YP_002803582.1 putative oligopeptide ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 1e-37 42