Gene Information

Name : CLM_1116 (CLM_1116)
Accession : YP_002803330.1
Strain : Clostridium botulinum Kyoto
Genome accession: NC_012563
Putative virulence/resistance : Resistance
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1156460 - 1157182 bp
Length : 723 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGGAGACAATATCTTTAAGTAATAAAAAAATATTAATAATTGATGATGAGGAAGATATAGTTAGATTAATAAGAACGGT
ACTTAAAAAAGAAGGATTTCAAAATATATATTATGCTACTAACTTAGAAGATGGATTTAAAGAATTTAATAAGGTAGAGC
CAGATATTGTAATTTTAGATATTATGTTACCAGATGGAGAAGGATATGAATTATGTAAGACAATAAGAGCTAAATCTAAG
GTACCCATACTATTTTTATCTGCTAAGGGTGAAGAAATAGATAAAATATTAGGATTTGCTATAGGTGGAGATGATTATAT
AACTAAACCCTTTAGTACAAAGGAGTTAGCCTATAGGGTAAAGGCTCATTTAAGAAGGTATTCCTACGTGGAAAATGCTA
GCGAGGAAAAAAATATTTTATCCTTTGGACCATTTGAGTTAAATATAAGTAAGGGAGAATTTAAAAAAGAAGGAAGGCTT
ATAGAATTAAAACCTAAAGAATTAGCATTAATAGCTTTTTTTGCAAAACATCCAAATCAAATAATAAGTAAAGAAAAAAT
TTGTGATAATGTTTGGGGAGAAGATTATTATGGATTCGATAATACTATAATGGTTCATATTAGAAGACTTAGAGAAAAAA
TTGAAAAAGAACCATCAAAGCCAGAGTATTTAATAAATGTTAAAGGTTTAGGGTACAAATTGGTGATAAAAAATGAAAAA
TAA

Protein sequence : 
METISLSNKKILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIMLPDGEGYELCKTIRAKSK
VPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYSYVENASEEKNILSFGPFELNISKGEFKKEGRL
IELKPKELALIAFFAKHPNQIISKEKICDNVWGEDYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKLVIKNEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sboR YP_006309915.1 SboR Not tested FWisland_1 Protein 3e-38 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLM_1116 YP_002803330.1 DNA-binding response regulator NC_012469.1.7685629. Protein 5e-37 44
CLM_1116 YP_002803330.1 DNA-binding response regulator NC_012469.1.7686381. Protein 2e-32 42
CLM_1116 YP_002803330.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 8e-33 41