Gene Information

Name : Avin_50860 (Avin_50860)
Accession : YP_002802148.1
Strain : Azotobacter vinelandii DJ
Genome accession: NC_012560
Putative virulence/resistance : Virulence
Product : AAA ATPase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 5155147 - 5157675 bp
Length : 2529 bp
Strand : +
Note : -

DNA sequence :
ATGGAACTGGGCACCCTGATCGGACGCCTCGACAGCGACTGCCGCCGCGCCCTGGAACGCGCCGCCCAGCGCTGCCTGCA
ACGCACCCACCATTACGTCGAGATCGAGCACCTCCTGCTGGAGTTGCTGGACATCGAGGGTGGCGACCTGGCCCGCGTGC
TGCCGCGCTTCGGCCTGGAACGCGATACCGTGGCCGGCGAGATCAACCGCGCCCTGGAGCTGTTCAAGGCCGGCAGCACC
CGCACCCCGGCGCTCTCGCCGAACCTCATCGGCCTCCTGGAAGACGCCGTGGTCCACGCCAGCCTGCAGAACCAGCCGAG
CATCCGCTCCGGCCTGCTGCTGCTCGCCTTGCTCGACCGCGAGGAACGCCGCAGCCTGCTGCTGAACAGCGCCTCCTCGC
TGCTGCGCATCCCGCGCGAGGCCCTGCGCAACCAGCTCGCCGAGTGCTCGCGCGAGCGACCGGCCCGCCCGTCGCAGGAC
AAGACCGATGCGTCGGCTGAGGACGGCTTCCTCGCCCAGTACACCCAGGATCTGACCGCCGACGCCCGCGCCGGACGCAT
CGACCCCATCGTCGGCCGCGACGGGGAAATCCGCCAGAGCATCGATATCCTGCTGCGCCGCCGGCAGAACAACCCGATCC
TGGTCGGCGCCCCCGGCGTCGGCAAGACCGCGGTGGTCGAGGGCCTGGCCCTGCGCATCGCCGCCGGCGACGTGCCGCCG
CCCTTGCAGAACGTCGAGGTGCGCGTCCTCGATCTCGGCCTGCTGCAGGCCGGCGCAGGGGTCAAGGGCGAATTCGAGCA
GCGCCTGAAGGGCGTGATCGACGGTGTGCGCAACGCCGAGCGGCCGGTGATCCTGTTCATCGACGAAGCCCACACCCTGA
TCGGCGCCGGCGGCGCCGAGGGCGGCAGCGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCGCGCGGCGAGCTGCGCACC
CTCGCCGCCACCACTTGGCTGGAATACAAGAAGTACTTCGAGAAGGACCCGGCCCTGGCCCGGCGCTTCCAGTTGGTCCA
GGTCGAGGAACCGGACGAGGCCACCGCGGTGGAGATGCTGCGCGGCGTCGCCGCCAAGCTGGAACAGCACCATGGCGTGC
TGGTGCTGGACGCGGCCATCCAGGACGCGGTGAAACTGTCGCACCGCTACATCTCCGGCCGCCAGTTGCCGGACAAGGCG
ATCAGCGTGCTGGACACCGCCTGCGCCCGCGTAGCCCTCGGCCAGCACGACGTGCCGCCACCCCTGGAGAGCCTGCGCCA
TCGCCAGCAGGCGCTGAAGGAAGAACTCGACCGCCTGCGCCGCGAACAGACCACCGGCCTCGACCACCGCGAACGCATCA
CCGCCCTGGAGCACGAAGCAGCCGGCAATACCGTGGCGATCCGCGAACTGGAAGGCCGCTGGCAGGAAGAGCGCGAAGCC
GTGCGCGCCCTGCTGGAGGCGCGCCGGGAACTGCTCGCCCTGAGCGACAATGCGGATGCCAGCAACTCCGACGAGGAACT
GGACGGACGCATCGACCACCTGGCCGCCGAACTGCTGCGCCTGGAGGCCGGCCTGGAAGCCATCCGCCAGGACGACCCGC
TGGTCCCGGAGCAGGTGGACTCCAAGGCCGTGGCCGCGGTGATCGCCAGCTGGACCGGCATCCCGGTCGGCAAGATGCTC
GCCGACGAGGTCCACGCCGTGCGCACCCTCGGCCAGCGCCTGGCGCAGCGGGTGATGGGCCAGGACGCGGCGCTGGCCAC
CATCGCCCAGCGTATCCAGGCCTATCGCGCCGGCCTCACCGACCCGCAGAAGCCGGTCGGCGTGTTCCTGCTGCTCGGCC
CCACCGGCGTCGGCAAGACCGAAACCGCCTACGCCCTGGCCGACGCCCTGTACGGCGGCGAACGCAACCTGATCGCCATC
AACCTCTCCGAATACCAGGAAGCCCACACCGTCAGCCAGCTCAAGGGCGCCCCGCCCGGCTACGTCGGCTACGGCAGCGG
CGGCGTACTCACCGAAGCCGTGCGCCGCCGCCCCTACTCGGTGGTGCTGCTCGACGAGATCGAAAAGGCCCACCCGGACG
TGCTGGAGGCCTTCTACAACGTGTTCGACAAGGGCGTGATGGAGGACGGCACCGGCCTGGTGGTGGACTTCAAGAACACC
GTGATTCTCGCCACCAGCAACGTCGGCGCCGAACTCATCCTCGACACCCCGGCCGACCAGGTCGGCGGCGACGCCTTCAA
CGAACGCCTGCGCAGCGTCTTGCTGCAGGCCTTCCGCCCGGCCTTCCTCGCGCGCATGACCGTGGTGCCCTACCGGCCGC
TGGACACGGTGACCCTGGAAAGCATCGTGGAGGCGAAACTGGAAAAACTGCGCGAGCGCTACAAGACCGCGACCGGAAAA
CCGTTGGAACTCGACGAGGACATCGTCGAGACGGTCCTGGGCCGCTGCGCTTCGACGGGGGTGCGGGATATCGAGAACCT
GTTGATGGGGGAAGTGGTGGGAAAGTTGGCGGAGTGGGTGTTGAAATGA

Protein sequence :
MELGTLIGRLDSDCRRALERAAQRCLQRTHHYVEIEHLLLELLDIEGGDLARVLPRFGLERDTVAGEINRALELFKAGST
RTPALSPNLIGLLEDAVVHASLQNQPSIRSGLLLLALLDREERRSLLLNSASSLLRIPREALRNQLAECSRERPARPSQD
KTDASAEDGFLAQYTQDLTADARAGRIDPIVGRDGEIRQSIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAAGDVPP
PLQNVEVRVLDLGLLQAGAGVKGEFEQRLKGVIDGVRNAERPVILFIDEAHTLIGAGGAEGGSDAANLLKPALARGELRT
LAATTWLEYKKYFEKDPALARRFQLVQVEEPDEATAVEMLRGVAAKLEQHHGVLVLDAAIQDAVKLSHRYISGRQLPDKA
ISVLDTACARVALGQHDVPPPLESLRHRQQALKEELDRLRREQTTGLDHRERITALEHEAAGNTVAIRELEGRWQEEREA
VRALLEARRELLALSDNADASNSDEELDGRIDHLAAELLRLEAGLEAIRQDDPLVPEQVDSKAVAAVIASWTGIPVGKML
ADEVHAVRTLGQRLAQRVMGQDAALATIAQRIQAYRAGLTDPQKPVGVFLLLGPTGVGKTETAYALADALYGGERNLIAI
NLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRRPYSVVLLDEIEKAHPDVLEAFYNVFDKGVMEDGTGLVVDFKNT
VILATSNVGAELILDTPADQVGGDAFNERLRSVLLQAFRPAFLARMTVVPYRPLDTVTLESIVEAKLEKLRERYKTATGK
PLELDEDIVETVLGRCASTGVRDIENLLMGEVVGKLAEWVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 4e-139 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Avin_50860 YP_002802148.1 AAA ATPase VFG2076 Protein 1e-157 56
Avin_50860 YP_002802148.1 AAA ATPase VFG2084 Protein 2e-134 45