Gene Information

Name : xerD (Avin_39510)
Accession : YP_002801065.1
Strain : Azotobacter vinelandii DJ
Genome accession: NC_012560
Putative virulence/resistance : Unknown
Product : site-specific tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 4001036 - 4001932 bp
Length : 897 bp
Strand : -
Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d

DNA sequence :
ATGCCTGGCGTCGAGCATCCACAGATCGAGCGTTTTCTCGAAGCCCTCTGGCTGGAAAAGGGCCTCTCGGCGCATACCCG
GGCGGCCTATCGCAGCGATCTCGAACTTTTCAACGGCTGGCTGTGCGAGCGCGGCCTGGCGCTGGTCGAGGTGGGGCGCG
AGCTGATCCTCGATCATCTGGCCTGGCGGGTCGATGCCGGTTACAAGGCGCGCTCCACGGCACGTTTTCTTTCCGGTCTG
CGAGGCTTCTTCCGCTATCTGCTGCGCGAGGGCGTGATCGCCGGCGATCCGACCCTGCAGGTGGAACTGCCGCAATTGGG
CCGTCCCCTGCCCAAGTCCCTTTCCGAGGCCGATGTCGAGGCGCTGCTGGCAGCGCCGGAAGACGACGATCCGCTCGGGC
TGCGCGACCGGGCCATGCTCGAAGTGCTGTATGCCTGTGGCCTGCGGGTCAGCGAACTGGTCGGCCTGCGCCTGGAGCAG
TTGAACCTGCGCCAGGGGGTGGTGCGGGTATTCGGCAAGGGCAGCAAGGAGCGCCTGGTGCCTCTGGGCGAGGAGGCCAT
CGCCTGGCTCGAGCGCTATTTGGTCGAGGCCAGGCCGCTGCTGCTGGGCGGGCGGCCGAGCGACGTGCTCTTTCCCAGCC
TGCGTGGCGAGCAGATGACCCGGCAGACCTTCTGGCACCGCATCAAGCATCACGCCCGGCTGGCGGGGATCGGCAAGAGT
CTGTCGCCGCACACCCTGCGCCATGCCTTCGCCACCCATCTGCTCAATCACGGTGCCGATCTTCGCGTGGTGCAGATGCT
TCTCGGCCACAGCGACCTGTCGACCACTCAGATCTATACCCATATCGCCCGGGCACGCCTACAGGAGCTGCACGCGCGGC
ATCATCCGCGTGGCTGA

Protein sequence :
MPGVEHPQIERFLEALWLEKGLSAHTRAAYRSDLELFNGWLCERGLALVEVGRELILDHLAWRVDAGYKARSTARFLSGL
RGFFRYLLREGVIAGDPTLQVELPQLGRPLPKSLSEADVEALLAAPEDDDPLGLRDRAMLEVLYACGLRVSELVGLRLEQ
LNLRQGVVRVFGKGSKERLVPLGEEAIAWLERYLVEARPLLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHARLAGIGKS
LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHARHHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 3e-65 54
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 3e-65 54