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Name : lysS (Avin_39390) Accession : YP_002801054.1 Strain : Azotobacter vinelandii DJ Genome accession: NC_012560 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 3988146 - 3989648 bp Length : 1503 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAGCGAACAACCGCTGAACCAGCATGCCCTCCACGAGGAAGAAAACAAGCTGATCGCCCTGCGCAAGGAGAAACTCGC CGCCGAGCGCGCGAAAGGCAATGCCTTCCCCAACGACTTCCGCCGCGACAGCTACTGCGCCGACCTGCAGAAGCGCTATG CCGAGGCGGGCAAGGAGGAGCTGGAAGCGGCCGCGATCCCGGTCAAAGTGGCCGGGCGCATCATGCTCAACCGCGGCGCC TTCATGGTCATCCAGGACATGACCGGGCGCATCCAGGTCTACGTCGACCGCAAGGGCCTGCCGGCCGAGACGCTGGAGGC GGTCAAGCACTGGGACCTGGGCGACATCATCGCCGCCGAGGGCACCCTGGCGCGCTCCGGCAAGGGCGATCTCTACGTGC ACATGAGCACGGTGCGCCTGCTGACCAAGTCGCTGCGCCCGCTGCCGGACAAGCATCATGGCCTGACCGACACCGAGCAG CGCTACCGCCAGCGTTACGTCGACCTGATGGTCAACGAGGAAACCCGCCACACCTTCCGCGTGCGTTCGCAGATCATCGC CCACATTCGCAGGTTCCTCGCCGAGCGCGACTTCCTCGAGGTGGAAACGCCGATGCTCCAGGTCATCCCCGGCGGCGCCG CGGCCAAGCCCTTCCAGACCCACCACAACGCGCTGGACCTGCCGATGTTCCTGCGCATCGCACCCGAGCTCTACCTCAAG CGCCTGGTGGTCGGCGGCTTCGAGCGGGTCTTCGAGATCAACCGCAACTTCCGCAACGAAGGCGTCTCGACCCGCCACAA CCCCGAATTCACCATGCTCGAGTTCTACCAGGCCTACGCCGACTACGAGGACAACATGGACCTCACCGAGCAGTTGTTCC GCGAACTGGCGCAACTGGTGCTGGGGACCACCGACGTGCCCTACCAGGGTAAGGTGTTCCACTTCGGCGAGCCCTTCGCC CGCCTGTCGGTGTTCGACTCGATCCTCTACTACAACCCGGAAGTCTCCGCCGCGGACCTGCGCGACATCGAGAAATGCCG CGCCATCGCCAGGAAGGCCGGCGCCGACGTCAAGGGTTTCGAGGGACTGGGCAAGCTGCAGACGATGATCTTCGAGGAGT TGGTCGAGCACCGCCTGGAACAGCCGACCTTCATCACCCGCTATCCCTTCGAGGTTTCGCCGCTGGCGCGGCGCAGCGAC GACGATCCGAGCGTCACCGACCGCTTCGAGCTGTTCATCGGCGGCCGCGAGATCGCCAACGCCTACTCCGAGCTGAACGA CGCCGAGGACCAGGCCGAGCGCTTCATGCAGCAGGTCCGGGACAAGGATGCCGGCGATGACGAGGCCATGCACTTCGACG CCGACTTCGTGCGCGCCCTGGAATACGGCATGCCGCCGACCGCCGGCGAAGGCATCGGCATCGACCGTCTGGTGATGCTG CTGACCGATTCGCCGTCGATCCGCGACGTGATCCTTTTCCCGCACATGCGTCCGGAAGTCTGA Protein sequence : MSEQPLNQHALHEEENKLIALRKEKLAAERAKGNAFPNDFRRDSYCADLQKRYAEAGKEELEAAAIPVKVAGRIMLNRGA FMVIQDMTGRIQVYVDRKGLPAETLEAVKHWDLGDIIAAEGTLARSGKGDLYVHMSTVRLLTKSLRPLPDKHHGLTDTEQ RYRQRYVDLMVNEETRHTFRVRSQIIAHIRRFLAERDFLEVETPMLQVIPGGAAAKPFQTHHNALDLPMFLRIAPELYLK RLVVGGFERVFEINRNFRNEGVSTRHNPEFTMLEFYQAYADYEDNMDLTEQLFRELAQLVLGTTDVPYQGKVFHFGEPFA RLSVFDSILYYNPEVSAADLRDIEKCRAIARKAGADVKGFEGLGKLQTMIFEELVEHRLEQPTFITRYPFEVSPLARRSD DDPSVTDRFELFIGGREIANAYSELNDAEDQAERFMQQVRDKDAGDDEAMHFDADFVRALEYGMPPTAGEGIGIDRLVML LTDSPSIRDVILFPHMRPEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-132 | 59 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 7e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002801054.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-132 | 59 |
