Gene Information

Name : rdgB (Avin_03010)
Accession : YP_002797536.1
Strain : Azotobacter vinelandii DJ
Genome accession: NC_012560
Putative virulence/resistance : Unknown
Product : putative deoxyribonucleotide triphosphate pyrophosphatase
Function : -
COG functional category : F : Nucleotide transport and metabolism
COG ID : COG0127
EC number : -
Position : 282429 - 283025 bp
Length : 597 bp
Strand : -
Note : HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine

DNA sequence :
ATGATGACTCTCAGCCAACTGGTGCTGGCCAGCCACAATGCCGGCAAGCTCAAGGAACTCCAGGCCCTTCTGGGCAACGC
CGTGCGGGTACGCTCGGTCGGCGAATTCAGCGACGTCGCGCCGGAAGAGACCGGCCTGTCCTTCGTCGAGAACGCCATCC
TCAAGGCCCGTCATGCGGCGCGGCTGTCCGGCCTGCCGGCGCTGGCCGACGACTCGGGCCTGGCGGTCGATGCCCTGGGC
GGCGCACCGGGCATCCATTCGGCGCGCTATGCCGGCGGAGGCGGCGACGCGGCGAACAACGCCAAGCTGCTGGAGGCGCT
CCGCGAGGTGCCGGACGCCGAGCGTGGCGCCCGCTTCGTCTGCGCCCTGGCCCTGGTGCGGCATGCCGAGGACCCGCTGC
CGATCATCTGCGAGGGCCTCTGGCAGGGGCGCATCCTGCACGCACCGCGCGGCACCGAGGGCTTCGGCTACGACCCGCTG
TTCTGGGTGCCGGAGCGCGGCTGCTCCAGCGCCGAGCTGGCCTCGGCCGAGAAGAACCGCCTGAGCCACCGCGCCCGCGC
CATGCTCCAGCTCAGGCAGCGGCTGGGACTGGCATGA

Protein sequence :
MMTLSQLVLASHNAGKLKELQALLGNAVRVRSVGEFSDVAPEETGLSFVENAILKARHAARLSGLPALADDSGLAVDALG
GAPGIHSARYAGGGGDAANNAKLLEALREVPDAERGARFVCALALVRHAEDPLPIICEGLWQGRILHAPRGTEGFGYDPL
FWVPERGCSSAELASAEKNRLSHRARAMLQLRQRLGLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1465 YP_001800859.1 deoxyribonucleotide triphosphate pyrophosphatase Not tested Not named Protein 4e-23 47