|
Name : Avin_29580 (Avin_29580) Accession : YP_002800099.1 Strain : Azotobacter vinelandii DJ Genome accession: NC_012560 Putative virulence/resistance : Virulence Product : Ornithine/lysine/arginine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 3054945 - 3057185 bp Length : 2241 bp Strand : - Note : - DNA sequence : GTGTACAAAGACCTCGATTTTCCGATTCTCATCGTCCATCGCGACATCAAGGCCGACAGCGTCGCCGGCGAGCGCGTGCG GGCGATCGCCCGGGAACTGGAGCAGAACGGCTTCAGTATCCTTTCCAGCGCCAGTTCCAGCGAAGGGCGCATCGTCGCTT CGACCCACCACGGCCTGGCCTGCGTCCTGGTCGCCGCCGAGGGGGCAGGGGAAAACCCGCGCCTGCTGCAGGACATGTTC GAGCTGATCCGCCTCGCCCGTGCCCGTGCTCCGCAATTGCCGATCTTCGCCCTCGGCGAGCGGATCACCATCGAGAACGC TCCGGCCGAGGCGATGGCCAACCTCCACCAGTTGCGCGGCATCCTCTATCTGTTCGAGGACACCGTGCCCTTCCTGGCCC GCCAGGTCGCCCGCGCCGCCCGCGGCTACCTGGCCGGGCTGCTGCCGCCTTTTTTCAGCGCACTGGTCGAGCACACCCTG CAGTCCAACTACTCCTGGCACACGCCCGGTCACGGCGGCGGCGTGGCCTACCGCAAGAGCCCGGTGGGCCAGGCGTTCCA CCAGTTCTTCGGCGAGAACACCCTGCGCTCCGATCTCTCGGTGTCGGTGCCGGAACTCGGCTCGCTGCTCGACCACACCG GCCCGCTGGCCGCGGCGGAACTCAGGGCGGCCCGCAATTTTGGCGCCGATCACACCTTTTTCGTGATCAATGGCACTTCG ACCGCCAACAAGATCGTCTGGCATTCCATGGTCGCCCGCGACGACCTGGTGCTGGTCGACCGCAACTGCCACAAGTCGAT CGTCCATGCCATCGTCATGACCGGAGCGATTCCCCTCTATCTGGTGCCGGAGCGCAACGAGCTGGGCATCATCGGGCCGA TTCCGCTCAGCGAATTCAGCCGCGAATCGATCGCCGCGAAGATCGCCGCCAACCCCCTGGCTCGCGGCCGCGAGCCGCGG GTGAAGCTCGCCGTGGTGACCAACTCCACCTACGACGGCCTCTGCTACAACGCCGAGCTGATCAAGCGGACCCTGGGCGA TAGCGTCGAGGTGCTGCACTTCGACGAGGCCTGGTTCGCCTACGCCGCCTTCCATGAGTTCTATGCCGGGCGCTACGGCA TGGGCACCACGCGCTCGCCGGACGCTCCGCTGGTGTTCAGCACCCACTCCACCCACAAGCTGCTGGCGGCCTTCAGCCAG GCCTCGATGATCCACGTGCAGGACGGTGGACGCCGGCAACTGGACCGCGACCGCTTCAACGAAGCCTTCATGATGCACAT CTCCACGTCCCCGCAGTACGGCATCCTCGCTTCGCTGGATGTCGCCTCGGCGATGATGGAGGGGCCGGCCGGCCGTTCGC TGATCCAGGAGACCTTCGACGAGGCGCTCAGTTTCCGTCATGCCCTGGCCAACCTGCGCCAGGGCCTGGCGGCGGACGAC TGGTGGTTCGATATCTGGCAGCCGCCGCTCGGCGCGACCGGAGGGCAGGGGAACGCCGCCGACTGGCTGTTGACCCCGGC GGCCGACTGGCATGGTTTCGATGCCTTGCCGGAGGATTACGTGCTGCTCGATCCGATCAAGGTCACCCTGGTGACACCGG GGCTGGGGGGCGCCGGGCAGGGCATTCCGGCGGCGGTGGTCGGCCGCTTCCTGTGGGAGCGTGGCCTGGTGGTGGAAAAG ACCGGCCTGTATTCCTTCCTGGTGCTGTTCTCCATGGGTATCACCAAGGGCAAGTGGAGCACCCTGCTGACCGAGTTGCT GGAGTTCAAGCGTTGCTACGACGCCAACCTGCCGCTGGAGCAGGTGCTGCCGTCCATCGCCGGGGCCGGCGGCGCCTGCT ATGCCGGCATGGGGCTGCGCGATTTGTGCGACCAGTTGCACGACTTCAACCGGCAAAGCGCCCGGGCCAAGGCGCTCAAG CACTTGTACAGCCTGTTGCCGGAGATCGCCCTCAAGCCGGCGGATGCCTACGACAAGCTGGTGCGCGGCGAGGTCGAGGC GGTGCCCATCGAGCATCTCGAGGGACGCATCGCGGCGGTGATGCTGGTACCCTATCCACCGGGCATTCCCTTGATCATGC CGGGCGAGCGCTTCACCCGGACCACCAGGGCGATCGTCGAGTACCTGCATTCCACCCGCGCCTTCGATGCGCGCTTTCCG GGATTCGGCCTGGACGTACACGGCCTGCAGCATGAGGAGGGCCCGCAAGGGCGGGTCTACACGGTCGACTGTCTGTGCTG A Protein sequence : MYKDLDFPILIVHRDIKADSVAGERVRAIARELEQNGFSILSSASSSEGRIVASTHHGLACVLVAAEGAGENPRLLQDMF ELIRLARARAPQLPIFALGERITIENAPAEAMANLHQLRGILYLFEDTVPFLARQVARAARGYLAGLLPPFFSALVEHTL QSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAAAELRAARNFGADHTFFVINGTS TANKIVWHSMVARDDLVLVDRNCHKSIVHAIVMTGAIPLYLVPERNELGIIGPIPLSEFSRESIAAKIAANPLARGREPR VKLAVVTNSTYDGLCYNAELIKRTLGDSVEVLHFDEAWFAYAAFHEFYAGRYGMGTTRSPDAPLVFSTHSTHKLLAAFSQ ASMIHVQDGGRRQLDRDRFNEAFMMHISTSPQYGILASLDVASAMMEGPAGRSLIQETFDEALSFRHALANLRQGLAADD WWFDIWQPPLGATGGQGNAADWLLTPAADWHGFDALPEDYVLLDPIKVTLVTPGLGGAGQGIPAAVVGRFLWERGLVVEK TGLYSFLVLFSMGITKGKWSTLLTELLEFKRCYDANLPLEQVLPSIAGAGGACYAGMGLRDLCDQLHDFNRQSARAKALK HLYSLLPEIALKPADAYDKLVRGEVEAVPIEHLEGRIAAVMLVPYPPGIPLIMPGERFTRTTRAIVEYLHSTRAFDARFP GFGLDVHGLQHEEGPQGRVYTVDCLC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 2e-117 | 44 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 2e-117 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Avin_29580 | YP_002800099.1 | Ornithine/lysine/arginine decarboxylase | VFG1670 | Protein | 1e-117 | 42 |
