Gene Information

Name : ompR (LHK_00329)
Accession : YP_002794333.1
Strain : Laribacter hongkongensis HLHK9
Genome accession: NC_012559
Putative virulence/resistance : Virulence
Product : OmpR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 315472 - 316131 bp
Length : 660 bp
Strand : -
Note : Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGCGTATTGCTGGTCGAAGACGATCCGCTCCTGGGCGACGGCCTTGAGGCCGGACTGCGGCAATCAGGTTTCAACGT
GGACTGGATGAAGGACGGCGCCGCCGCCCGCGCGGCCATGGCGGCCGCTCCCTACGACGCAGTGGTGCTGGACCTCGGCC
TGCCCAAGGTGTCGGGACTCGACGTGCTGGGCGAATGGCGCCGCCAGGGCGTGGACACGCCGGTGCTGATCCTGACCGCC
CGCGACTCGGTCGAGGACCGCATCCGCGGACTGGATACCGGTGCCGACGACTACCTGGTCAAACCCTTTGCCCTGGGCGA
AGTGGTTGCCCGCCTGCGCGCCCTGATCCGCCGCTCGCACGGCCGCGCCAACCCGGTGTTCGAACACGGCACGCTGGTGC
TCGACCCGAATGCCCGTACGGTGTTGCAGGACGGCCGGGCGGTCGAGCTGACCGCCAAGGAATTCCAGCTGCTGGAACTG
TTCCTCGAAAACAAGTCGCGCGTGCTGCCGCGCGCCCTGCTGGAAGAAAAACTCTACGGCTGGGCCCAGGAACTCGACAG
CAATGCACTGGAAGTCCACGTGCACCACCTGCGCAAGAAACTCGGCAGCCAGCTGATCCGCACCGTGCGCGGCGTCGGCT
ACCAGCTGGGCGAGGCATGA

Protein sequence : 
MRVLLVEDDPLLGDGLEAGLRQSGFNVDWMKDGAAARAAMAAAPYDAVVLDLGLPKVSGLDVLGEWRRQGVDTPVLILTA
RDSVEDRIRGLDTGADDYLVKPFALGEVVARLRALIRRSHGRANPVFEHGTLVLDPNARTVLQDGRAVELTAKEFQLLEL
FLENKSRVLPRALLEEKLYGWAQELDSNALEVHVHHLRKKLGSQLIRTVRGVGYQLGEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-42 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ompR YP_002794333.1 OmpR BAC0487 Protein 4e-42 48
ompR YP_002794333.1 OmpR NC_002516.2.879194.p Protein 6e-31 44
ompR YP_002794333.1 OmpR BAC0347 Protein 5e-35 43
ompR YP_002794333.1 OmpR BAC0111 Protein 1e-35 42
ompR YP_002794333.1 OmpR BAC0638 Protein 3e-31 42
ompR YP_002794333.1 OmpR BAC0197 Protein 8e-35 42
ompR YP_002794333.1 OmpR BAC0083 Protein 1e-35 41
ompR YP_002794333.1 OmpR Y16952.3.orf35.gene. Protein 2e-24 41
ompR YP_002794333.1 OmpR CP001918.1.gene5135. Protein 8e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ompR YP_002794333.1 OmpR VFG1390 Protein 6e-34 44
ompR YP_002794333.1 OmpR VFG0473 Protein 6e-39 44
ompR YP_002794333.1 OmpR VFG1389 Protein 4e-31 43